RNA id: TU227029


Basic Information

Item Value
RNA id TU227029
length 845
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G167498
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21792110 ~ 21794539 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGAAGGTAGATGCGGAGAGTAGCCTTGAGCAGGTATTAACACTCAAGGTGAGGCAAAGGTGATGTGAAAAAAATGATGGGCTTTATTATCAATGACCCAAGTAAGGTCCATAAGAAAAAATGACAATAGAAAGAATTAACAAAATTAAGGAAAGTAACCAAAAAGCACtttcaaaaaaagataaaattcaAATTGACTTAAGTCAAAACAATCAAAAGTATAAATACACCACTATTCGCTATAGTAGACCTTAAATCAGGTTTAACGTGGAGATCCTCCAGCAGACTTACGTCCTACTACCTTCACGTATACTCCAGCTCTCCTCTCCTGAGCAAACACATGGCCACCCTATATAGCCTGACGCCACCCCTCAAATTGGAACATACCAACCTGTAAAACTCAGGGGTGGCTCAGGTGAGTAGGCCGTAATGGCTTCATAcagcacacataaatatacaacaATCTAAATAGATACAACATATAATTTATACAATAGGTATTACCATTAACCACAGCCACAAGGTATCTTGTTGgctgtaaaatataatacacCACAAGTCATGTTTGTGACAATCTATAGCTTTTAAACAAACCATGATAAATGCATTTAGCTAAGCTTATCAAATAGTAAATCACCGCAGCAATAGAGGTTAAACATTTGTGCACAAAACTACGGGATTAATACAGGGAATTCAATAAATGACAGACAATATAAAACCAGTATAAATAACCGGACATagacagtcaaacaaacatgtacAAGCAACATTCTTCACTCAGTCTTTGAGATTAAAACAGGTAGCGCATCGCTACCGTGACGGCAGCCATGCGCCCCGTCACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226964 lncRNA downstream 78676 21659345 ~ 21713434 (-) True G167461
XR_005636366.1 lncRNA downstream 144125 21644687 ~ 21647985 (-) False LOC120543579
XR_005636367.1 lncRNA downstream 144125 21644687 ~ 21647985 (-) True LOC120543579
TU226912 lncRNA downstream 183345 21587878 ~ 21608765 (-) True G167420
TU226837 lncRNA downstream 342550 21448832 ~ 21449560 (-) True G167373
TU227048 lncRNA upstream 49612 21844151 ~ 21844683 (-) True G167515
TU227049 lncRNA upstream 50158 21844697 ~ 21848643 (-) False LOC120543962
TU227149 lncRNA upstream 143154 21937693 ~ 21937940 (-) True G167580
TU227185 lncRNA upstream 192080 21986619 ~ 21987487 (-) True G167590
TU227187 lncRNA upstream 196407 21990946 ~ 21994466 (-) True G167591
XM_039776802.1 mRNA downstream 27452 21753406 ~ 21764658 (-) False nfrkb
XM_039776801.1 mRNA downstream 27904 21753406 ~ 21764206 (-) True nfrkb
XM_039778147.1 mRNA downstream 50329 21722318 ~ 21741781 (-) False brd8a
XM_039777403.1 mRNA upstream 52962 21847501 ~ 21863744 (-) True LOC120543962
XM_039778524.1 mRNA upstream 72915 21867454 ~ 21876379 (-) True gabrr3a
XM_039778129.1 mRNA upstream 112935 21907474 ~ 21912005 (-) True si:ch211-244c8.4
XM_039778128.1 mRNA upstream 120990 21915529 ~ 21919381 (-) False LOC120544412
XM_039778127.1 mRNA upstream 120990 21915529 ~ 21919188 (-) True LOC120544412
TU226981 other downstream 50306 21733840 ~ 21741804 (-) False brd8a
XR_005636498.1 other downstream 50329 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other downstream 50329 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other downstream 50329 21722318 ~ 21741781 (-) False brd8a
TU226908 other downstream 207928 21574218 ~ 21584182 (-) True G167416
TU227181 other upstream 202420 21996959 ~ 21998648 (-) True G167589
TU227308 other upstream 645791 22440330 ~ 22446756 (-) True chrdl2
TU227366 other upstream 672044 22466583 ~ 22468593 (-) False mepcea
TU227367 other upstream 672044 22466583 ~ 22468593 (-) False mepcea
TU227368 other upstream 672044 22466583 ~ 22468593 (-) False mepcea