RNA id: XM_039778129.1


Basic Information

Item Value
RNA id XM_039778129.1
length 4402
RNA type mRNA
GC content 0.49
exon number 3
gene id si:ch211-244c8.4
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21907474 ~ 21912005 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAGCTCCTCAGTTGCTATGGCAACCAGGGAGAACAGCCAGACAAAAATGAGGCAAAGGGGAGGGGCTTTCAAGGGAGAAATAGAGGAGAAAGGGCTGGATGTGAAAGatagacagagggagggatacagacagcCATTAAAGAAACGCAGTTAAAGCAAAAGAGGTAAAGCAAGACTACAGACGGAGATAGAGATAAGGTCTGGATATAAATGCTCACTCCACTGGCAGGGGAATTATAACTGCAAGTGACTGGAGGATACAGAGAAAGGGGGACTCAGAGAGAAGATGGATGTACAAACGGAGAACATGGACCCCCCGCCTTGTGAATCCCAGTCGAGTGGaaaaatcagaaaaggattcAAGCTGTTTGGCAAACGCAAGCCAGGTAACATCTTTTCTATTCGAAGCAAAGGGGATGGAAACAACAAGTCACCTGTTATCAGGAGCACTACCATAGATGGATTATCTGAGACCGCTGCACAAGATTTAGAGCAGGAGCTGGACAGGGAAAAGGGACAGGAGGTGAGTCAAGGAGAGAGGGAGCATGCAGAGGAGGAGCCGCTTGGTGAAGATGGCACTCTGGCTGCTGCCCCTGCTCGCGCCTCCATTTCTTCAGCCAGCTCAGCCAAGTCCCTCAGCTTCCTGTCGTTGCTGAGGGGTGGCCGGAGAGGAGTGGGGGACCGCAGAGTTCACACCGTGTCCCAGCCAGTGGGTCGACATCGTCGTGGGCTGAAGGGTCTCTTTGACAATGTTAGGTTCCGATCAAAAGATAAAGAGAAGGAGGAAGCCCCTCCGAGCCCTCTTCTCATGTCGTCCCGCGCCAACAGTGTGGAAATCATCAAAGAGGACCTCACCCTTACCCCTAAATGCCAGCCTCGCTCTCTGGACAGCCCTGAGACTGAGAGCTGTGATCCTGAGAAGAGCTTAACAACACAAGACAGTGCAGCCACATCCCCATCAGAGCCCATAACTCCCCAGGTGACAGCAGGCAATGTGAGTAGAACTAATGAGCATGTGCTGCCTTTACCCACCTCTGAACCACCCTTGGTACCCGGTGATAACAGCCTGAGCTGCTTGCTGGCAGACATCTCCTCTCTCCTGACCTTTGACTCAATCTCAGGGGGTGGTGACATCATGGCTGATGTGGAGGCAGAGTGGGGGAAAGCCAGCAGTCCCATTGGTTCTGTGGTGACGGAAGTCATGCCATCATCCACATCTCTCTTCTCTAAACCTACCATCTCAACTCCACTGACCTCTGCCTCTGTCAGCAATGCTGCTATGGCAAAATCCTCATCTGTAGCCGTCCCCACGACAGCCTCCACCCAATCCTTTACTCCTCTGACAAAGACACCTTCAACCTCTTCTCCCATTGCCAAGCCCAGCTCCATCATCACGACGTTGACCAAATCTTCCACTTTGACTACTCACTCAGTCAAATTGAGTTCGGACTCTACTCCAGCCTCTGAGCCTTCTGCTAGCATTAAACTTAAATTGACTCTTACGCCCATTGCAACAAAACCTTCAACAACCCCTATATCTTTAACAGGCCTTTCCGCTCCAATAATGTCTCCCCCTTCTATGACAATTAAATCTGCACTGAGCTCCACCTCTACTACTACCGCAGCTCCACCAAACACCCCGGCCACTGTAGTCAAGGCTCCCTCAGTTAGCCCAACTATTACCTGTAAGGCTAGCAAATTGGCTTCAGAGATTGCAGCACCTCTTCAAATGATTGCTTCAGTAAGTAAACCTATCTCTGTAACCACTCCAACTCCTGTGTCAGCTAAACCTCCACCAGTAACCCATAGCCCTCCCACCCCTGTTGCTTTCACCCAACCTTCACCTGCTAAATTGGATTCAGCTAGCAGTTTGAACCTGCAAACTTCCACTTCCTACAAACTTTCCCTAAGTTCAGCTGCAGGAGAATCTAAAGCCCCAGTGATAGTATCAACGGCCTGTGCAGTTACAACCAAACCCTCCTCTCCTGCACCAGTTATCCCCTCCAAGATGACAATGGTTCCCACATTAACTACGACCTCAGGCTCGGTATCTGCGGCCCTTTACATACCTACCCTTACCTCTAGCCCAATGGACTTAAATAAGACCCCTCCCTCCCTTGCAAGTGTTCCAGATATTTATCCTTACTCTCCCCCTACTCCCAGGACTAGAACCCAACCCAGTGCCGCTGCATCTCTCCCAACTCCATCTTCAACTTCCTTAGATAAGATTCCTCCCACGACTAAATCCACTCCTGCACCAGTCTCATTAGATAAGACGCCCCCTGCTCCACCATCGACTCCAACTCCTACCACTCATGCTGTTGTTTCTACAGCATCCACAACACCTCCTCCTCCGGGTCAGATCCAAGTCTCTCAATCTAAAGCCCCTCCAGTTCCTGCTCAAATCCCAATTTCTGTACCTAAAGATCCACTTTCCCCTGCTCAAATGCAAGTTTCTCAATCTAAAGCCCCTCTTGCTCCTGCTCAGATCCCAATTTCTGTATCAAAGCCCCCTCCTATCCCTGCTCAGATCCCCATTTCTGTATCAAAACCCCCTCCTGTCCCTGCTCATATCCCAATTTCTGTATCAAAGCCCCCTCCTGTCCCTGCTCAGATCCCCATTTCTGTATCAAAGCCCCTCCTTTCCCTGCTCAGATCCCAATTTCTGTATCAAAACCCCCTCCTGTCCCTGCTCAGATCCCAAGTTCTGTATCAAAGCCCCCTCCTGTTCCTGCTCAGATCCCAATTTCTGTATCAAAACCCCCTCCTGTCCCTGCTCAAATCCCAAGTTCTGTGTCTAAAGATTCGCCTGCTCCTGTTCAAATTCAAGTTTCCCAATTTAAAGCCCAGATTGCCCCTGCTTGTATCGCAGTTTCTGCATCTACTGACCTTCCTGCCCCTGTTCATATCCCAGATTCTGTATCTAAAGCCCCTCCTGCACCAACCCCTGGCCCTTGCCCTGTCACTTCTCTTCCTTCTACCCCTGCACCTTGTCCGAGTGAGGCCCCAGCCTGCTAAGATGAGAGGAAGTGGACAGGCATCAGTCGATGGGCAACTGACTAGTCCAAGTAGCACAAGTGCCCAGGGGGCCCAGACCGTACCATCCAAAACAGAGGAACTGCAAAATGAGTCACAAAAGAGCCTTCAGGGTCCCTCCAGAGAAAGGAGGATACCACAAGCAAAGGCATCAGGACTTAGCAAAATACCTGTAGTAGGAGGGGGCAGAGCAGGCAAGCTACCTGTCCGGGACAGTCAACATGTTGATGATGAAGGATGCAGGGACCCACCTACTCCTATGCACGAAGAAGAGAGGCCCCATTTCAACTCACACGATGCAGGGAGCAAAGATAAAATCAGTGATGTTGAAGCTAATGTGCCCACCTCAAAACACACCAAGGAGGAGAGTCAGCAGCTTCCCCAGCCGAAAGTCCTCACCAGTTCACCGCGTGACTCAAAGATCCCTGTGAAGCACGGCGTACAGTCTCACACTGCCTCCCAAATCCCTCAAGCTAAAGAACCCTCTCGCACCAAGATACCTGTGTCCAAGGTTCCTGTCCGCAGGGCTGACTGTAATTCCTGGCGTCACTACACCATAAGCAACAGTAACAGAGTCGAGGAGGCCGACAGCACTCAAGCACAAAACATCTCCACAGGGAGCCGAACAACAAGTCTGGCTCTTTGGTGCTGAGCCAACTGGACATGCACTCAGGAAAGGTTCGGGgtcacacctgaacacacagcaGCATCGGTAACTAAGGATAAGCAAGATAAAAAGGTCTTCTGGgaacacagtcacacaacatGGGCGAGTGCCTTTTTAAAGGGTGCTTTTCTGACAGACTCTCAGAATTAATCTTTTCTACAGTACTTTTAACTTTTGTTACTCCCACTTTTTGTAGGAACCGTTAaatctttttgtctttcttttcagCAAGTCTATTTGATAATaacctgtttttatttatgtcagGAGAAGAACATCAGGAGCTCTATAAATTAATGCAACAACCAAATTTACATTCCACACCTATCTCTGGATCTATGTAGCAGAAAATGTGCCATTACATTTTGCACAAGATGTTGAACTGTACAGCGCCTGTGTGTCGGCTTGCTCATATGTAACATGATCAGATCTCACTGTGATCTCTGAGAAAGACTGGTTTTGAGGGAGGAATGGAAATCACTCCTTCCAATGAAAAGGACAGTGGACAGCAGCCATTATGAATGGCACTGTGGATGTTTGAGCGAGACAGAGAGGATGCTGAGAGATCTCTCACACACTGGCACATCCTTATCCCACTTATACTCAGATGAGAACAATATATCTGTGTATCATCTCATCTAtgttgttctgtttcctgttataATCAATAAAACATTATGAGTACTTCGCAAGATGA

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0022834 ligand-gated channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227049 lncRNA downstream 58831 21844697 ~ 21848643 (-) False LOC120543962
TU227048 lncRNA downstream 62791 21844151 ~ 21844683 (-) True G167515
TU227028 lncRNA downstream 112935 21792110 ~ 21794539 (-) False G167498
TU227149 lncRNA upstream 25688 21937693 ~ 21937940 (-) True G167580
TU227185 lncRNA upstream 74614 21986619 ~ 21987487 (-) True G167590
TU227187 lncRNA upstream 78941 21990946 ~ 21994466 (-) True G167591
TU227186 lncRNA upstream 80688 21992693 ~ 21994466 (-) False G167591
TU227147 lncRNA upstream 100694 22012699 ~ 22015678 (-) True G167579
XM_039778524.1 mRNA downstream 31095 21867454 ~ 21876379 (-) True gabrr3a
XM_039777403.1 mRNA downstream 43730 21847501 ~ 21863744 (-) True LOC120543962
XM_039776802.1 mRNA downstream 142816 21753406 ~ 21764658 (-) False nfrkb
XM_039776801.1 mRNA downstream 143268 21753406 ~ 21764206 (-) True nfrkb
XM_039778142.1 mRNA downstream 165693 21722318 ~ 21741781 (-) False brd8a
XM_039778128.1 mRNA upstream 3524 21915529 ~ 21919381 (-) False LOC120544412
XM_039778127.1 mRNA upstream 3524 21915529 ~ 21919188 (-) True LOC120544412
XM_039778299.1 mRNA upstream 9202 21921207 ~ 21928428 (-) True LOC120544506
XM_039777997.1 mRNA upstream 25514 21937519 ~ 21942289 (-) True LOC120544344
XM_039778396.1 mRNA upstream 40078 21952083 ~ 21955085 (-) True si:dkey-71d15.2
TU226981 other downstream 165670 21733840 ~ 21741804 (-) False brd8a
XR_005636498.1 other downstream 165693 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other downstream 165693 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other downstream 165693 21722318 ~ 21741781 (-) False brd8a
TU226908 other downstream 323292 21574218 ~ 21584182 (-) True G167416
TU227181 other upstream 84954 21996959 ~ 21998648 (-) True G167589
TU227308 other upstream 528325 22440330 ~ 22446756 (-) True chrdl2
TU227366 other upstream 554578 22466583 ~ 22468593 (-) False mepcea
TU227367 other upstream 554578 22466583 ~ 22468593 (-) False mepcea
TU227368 other upstream 554578 22466583 ~ 22468593 (-) False mepcea

Expression Profile