RNA id: TU227186


Basic Information

Item Value
RNA id TU227186
length 1652
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G167591
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21990946 ~ 21994466 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTAGTCTTTTTATTACAGtggcacacacataaaaacaatgtTTCCATGGAGCGCTTCCCTGCATCATCTGTCACCCTCAATGTAACAGTTTATTACAACAAATACTCACACTGTGTGGGTTGTTTTAAGACAGGTATTGACAATTAAAATTGTAGTCTGTCTTCTTATTTGACTAAATACTTTTCACGTTACAGAGAAAAGGCCCTTCCCTTCTGGTACCCATTTAAGGGTTACAAGCACTTGTTACAATGGTTAGAAATACCAATGACTGAAAACTAACATGGTAGCTCGCTGCTAGCAGTCTTGatatgaaagttttttttttgctacctAGTTTAGtcattttcctttttaacaATAATGTGTTCATGTActtgacaagaaaaaaaacagactgaaatttaaaaaagccaTTTATCCCTGTACATCTGAGCCAATAATGTACCACTGCTGAAGTGTTTAAATAGCACTAAACACCTTCTGAGCAAAACATACAAGTAGCACACAAAGCTACTGAATCAACAATACTTTACTCTTATGGGAATATGAAGTTTAGCTGATGAATGCACTCTGACTATAAGTCATCATGTTTACATTCACTGTTGTTTCCGCAATAGAGGTTTCAGTTTGTGGTCATTTTTGAGtgtaaatatttacacacatgtacatcaaaaattgaataaaacctTTCCAAAATACATGAAAATGAGCGGcttatgtttttgtcatgaaaCTCGAAGAAGGCACCTGAGCACCAGAGTATCGGCAAAATAAACACATGAAAGTTAACCCACTGTGAACCCGTCTTCAACCATCTGACTTTTAGAAGCGTCAGCATCAGCTGCTCAGCTCGGAGTGACACAAACATGAGACGACACATCCATCCTCTAAACAACATGAGACCTGCCAGGCACATTTGGTTTGGCAagataaattaaaatatttcaaacctttCCATTGGTATTCTTCACCCTCTCTTACAgtatattaaaagaaaaacattgtcTATATATTGAGGTTGATAGTAACAACAGACTTTACCCTGCTGCCTCTTATGGTTCTTTGTAacaggttaaataaaaaaataaaaagactaaaactgaAAACTGAATGATATATCATTCTCTTCATGAGATGAACAGCGATGGATGGACATCTGCTTTCTTACACCTCAAAAGTAACCCGAGAACATCATCAATCAAGCAAATTTAGAATCTAGTAAATATTTTATTCACATGGGGCCAGATTTACAAAACCTTCTAAGTGCCTAATGTTAAGGGAACCCTATATTCCTTAAAGTAGCTTAAGTAATTTCTTGAGGTTcgctgtaaaataaaaacaattaaggTATTATCTTTTATGGTACATTGTATGATGTGTGCGCATATGTGAGTGGCGGGGGGCGGGTATTATATTATTGGGTGGATGACGTGATGAAAAGAGGGGATGAAAATACTTTAGCTAACAGACTTCAGCTTGGTCCACGGGTTCGTACCGCGCACCTCCAGGGCTGGATTGTTGTAAAAGATGTGATTGCACAATTCTTCCAGTGGGGGTTCAGGATCTGTGGTGGCAAACTGAGCAGCGTCTTCAATTTCCTTCCTCACCGCCACATCAATCTCCTACAGACACCGCACAGGTAAGACAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227185 lncRNA downstream 5206 21986619 ~ 21987487 (-) True G167590
TU227149 lncRNA downstream 54753 21937693 ~ 21937940 (-) True G167580
TU227049 lncRNA downstream 144050 21844697 ~ 21848643 (-) False LOC120543962
TU227048 lncRNA downstream 148010 21844151 ~ 21844683 (-) True G167515
TU227030 lncRNA downstream 198154 21792110 ~ 21794539 (-) False G167498
TU227147 lncRNA upstream 18233 22012699 ~ 22015678 (-) True G167579
TU227285 lncRNA upstream 223640 22218106 ~ 22225686 (-) False zbtb20
TU227298 lncRNA upstream 303392 22297858 ~ 22333330 (-) True G167678
TU227312 lncRNA upstream 381791 22376257 ~ 22376520 (-) True G167690
TU227313 lncRNA upstream 382149 22376615 ~ 22377167 (-) True G167691
XM_039778659.1 mRNA downstream 7883 21971955 ~ 21984810 (-) False map7d2a
XM_039778658.1 mRNA downstream 7885 21971955 ~ 21984808 (-) False map7d2a
XM_039778656.1 mRNA downstream 7885 21971955 ~ 21984808 (-) True map7d2a
XM_039778660.1 mRNA downstream 7886 21971955 ~ 21984807 (-) False map7d2a
XM_039778661.1 mRNA downstream 7887 21974106 ~ 21984806 (-) False map7d2a
XM_039777682.1 mRNA upstream 21540 22016006 ~ 22017768 (-) False zgc:153704
XM_039777681.1 mRNA upstream 21540 22016006 ~ 22017766 (-) True zgc:153704
XM_039776639.1 mRNA upstream 26490 22020956 ~ 22028017 (-) False LOC120543538
XM_039776638.1 mRNA upstream 26490 22020956 ~ 22028017 (-) True LOC120543538
XM_039778221.1 mRNA upstream 35828 22030294 ~ 22036596 (-) True LOC120544462
TU226981 other downstream 250889 21733840 ~ 21741804 (-) False brd8a
XR_005636498.1 other downstream 250912 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other downstream 250912 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other downstream 250912 21722318 ~ 21741781 (-) False brd8a
TU226908 other downstream 408511 21574218 ~ 21584182 (-) True G167416
TU227181 other upstream 2493 21996959 ~ 21998648 (-) True G167589
TU227308 other upstream 445864 22440330 ~ 22446756 (-) True chrdl2
TU227366 other upstream 472117 22466583 ~ 22468593 (-) False mepcea
TU227367 other upstream 472117 22466583 ~ 22468593 (-) False mepcea
TU227368 other upstream 472117 22466583 ~ 22468593 (-) False mepcea

Expression Profile