RNA id: XM_039778661.1


Basic Information

Item Value
RNA id XM_039778661.1
length 2944
RNA type mRNA
GC content 0.51
exon number 17
gene id map7d2a
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21971955 ~ 21984810 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTTGATATCAGGGCGGGCTTACGCTGCGACGCACAGTGTGGTCGGTCGGTATAAACTCGATTGTGTGCGCATCATCATCTCCGCTCCAGCCCCAGCATCTCTCTCCTCCGTCCATCCACAAAAGACTCTCCTGTCCTGCCTGTCATCGCCTGTCCTGCCTATCTCTCCAGCCTTCATAATGACCTTCTAATTGAATagtgtgtgttcttgttgttgtttttgtccacTGTGGCTGCGCTTATTGCTGCTGACGTGAAGGGAAACGGATAGGCTACCTGTGCTGCATTGGCATCACCGCAGTGTTTTGGGTGACAGCACGTCCATACATTTGGGTGTTTTGTGCCTGTGACATCTACCATGGCAAAAACAGTCACATCATCCAGTGCAATAACAGGTGTAAAGATGGCACCACCGTCCATCACTTTACTTCCTGACAAGAGATCTCCGACAAATGGTCACAGCTCTCCAGCCCGAGCTGGAAAAACTACTCCATCTAACACAGAGAAGAAGCCACAAATAAATGGACACGCATCCCCTTCACACTTAGCAGCTAACATCAATAACAACCATGCAGGTAAACAAAATGTGGAGGGTTATATGAAGACGGACGACAGGATGCGATTAGCCAAAGAGAGAcgtgaggagagggagaaaagccTTGCGGCCCGAGAGCAGCTGATCAGGGAGAAGGAGCGCAGAGCTCGGCTGCAGTACGAACGCACAGTGGAGGAACGCTGGAGGCGGCTGGAGGAGCAGAGGCAGAAAGAGGAGCTCCGCAGAAATGCAGTGGGGGAGAAGAGGAGGCACCAGCTCGAGGAGGACAGGGAGCGACTTGAGGCCCTGATGAAACGCTCTCTGGAGCGAAGCCTTCAGCTGGAGCAGAGGACCAAACGCTGGAGCAGAGGCTGCTCTACAGGACCAGGTGACAGTGAGAATGTCCCACTCCCTTTCTCTGCTGCCTCCGCCTTTTCCCATGGCATTGCCTCCCCCCTTCCTGCTGTCAGCGAATCTGCGCCCTGCAGCCCTCACAGGTCACCTTTCCGTGGCTCGCTGAATCCTGCGGATCACAACAGATCTGGACTTCAGGGTGGCTCTCAGTCCACTCCCAATACCCCTAAGAAAGAGCGGCTGCGCAGGGAGAGAAGAACTGCATCCCCAGGTTGTGGATCCCCTGTGAGAAGATCGGAATCCCCTGCAAGTGTCACAAGGCACTTGGCTTCCCCTACTACCTCTAAgCTGGCATCTAAGATGCGTGCCCAGTCTCCCAGCAATGCACATCAGTACCATAACTCTCCTACAAGACATCGTCCAAACCTGTCACCTGATGAGAGGAAAGCAGAAGACAAGAAGGTGGAGAAACCCAGTGAACAATCCAAAGCAGAGAAAAAGAATACTGACATCAACAGCACAAATCCATCTTCACAAGATGAGAAGAATGTGGTCAACACTGAAAGCATTAAACTCAGATCTTCTAAAGGTGAAACCTTGGATAGGCATTTCAAAGGTGACACATCTGAAAAAAACCAGTCCCCTGACAGAAAGGACCACGTGTCCCCCAAAGTGGATTCCTCAGAGAAGAAGACGCAGAGCAACGCTCAGGATGGAGACAAGAAAAAAGAATCAGCACCATGCTCGTCCACAGGGAAGGTAGCAGCTGGCACAACGAATGCAGAGGAGGCTACCAGGTTGCTGGCAGAGCGTAGGCGTCAGGCTCGGGCTCAGAAAGAAGTGGAAGAGAAAAAGCGTGAACAAGAGGAAGAAGAACGACTAAGGAAAGAGCAGCTGAGGAAGCAACTCGCACAGGAGCAGCGACAGCAGGAGGCAAAGGCTCAGCAAGTGAAGCAAAATGGGAAAAATGAGGAAGATCTTCACAGGTTGAAACAAGAAGAAGACAAACAAAAGAAGGAGGAGCAGGAGCTACAGACCCAGATGAACAAAGAGagagaaaaagtccAAGTCAAGGCTCAGGTCGACACAGCGCGTCAGCGGCAAGACAGAGAACTGCAGAAGCaacaagaagaagaggagaggcaACTGAGGAAAAAGAGAATTGAAGAGATCATGAAGAGAACTAGGAAGGGTGAAGCTGACTTGAAGAAGGAGGAGCAGGTGGAGACGAAGCCCGTCTCACCACCAGGTGAAGTAAAGACTGTTCACACTAATGATCAGGTGAACGAGCAAGCAATCCAAAAGGTTGAGTTTCAGGTTAAAGAGCAGGTCTCAGTCAACATGAAGGAATGTGCCGTGGTGAAGAAAGAAGCAGCAGGAGCACAGATTGACAATCAGAAGAGTTTGCaagtgaaaaacaacacttatcAAGTGACAACAACACGCAGTGTTCCTGACAAGAGGCCGGACACCAAACGCACCACTGAAGAGCATGGCGGCCATCTTACCAGAGAGGGCAAAGCCTGTATCCTCAAGCAACAGGGAAGAGAGGTGGAAATTAATGTAAACAAGCAGCACAGTGCACATGTTAAAgaccaaataaataaagagcTGACAAAGCCAACAGCAGATGCCAAAGTCAACCAAAGGGAAGGTGGTATGATGAATGGAGCAGTAAAGGGTGAAGTAAGCGCCTTGAAGAGAAGCCATCTAATTGCTGAGgtaaacaaacaacagagcCTGCATGTGTTGGCAGCTGCTAAAGGAGGGTCCCAGATGGAGGTCATTAGACCCTCGGTGGCACCCCTGCCATTGGGACACCTTTCACCGCCAATCATCAAGCTGGCGCCACTAGATGTGAAGGGTACAGGGTCTTGTGATGAGGTGCAGTCCATGGAGGTCAGGTGAGTCATCAGcCCGGCTTCAAAGGAGGAACTGATTTCCATCCCAGAGTTCTCGCCAGTCAACGAAATCCAGCACAGCAGTGTGAGTAACAGCCGTGCTCTTGAAGACCTGATGGACCTGACAGGCAGCGTCACCTACCCCAAACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227149 lncRNA downstream 36166 21937693 ~ 21937940 (-) True G167580
TU227049 lncRNA downstream 125463 21844697 ~ 21848643 (-) False LOC120543962
TU227048 lncRNA downstream 129423 21844151 ~ 21844683 (-) True G167515
TU227029 lncRNA downstream 179567 21792110 ~ 21794539 (-) False G167498
TU227185 lncRNA upstream 1813 21986619 ~ 21987487 (-) True G167590
TU227187 lncRNA upstream 6140 21990946 ~ 21994466 (-) True G167591
TU227186 lncRNA upstream 7887 21992693 ~ 21994466 (-) False G167591
TU227147 lncRNA upstream 27893 22012699 ~ 22015678 (-) True G167579
TU227285 lncRNA upstream 233300 22218106 ~ 22225686 (-) False zbtb20
XM_039778655.1 mRNA downstream 2943 21956278 ~ 21971163 (-) True si:ch211-114c12.2
XM_039778396.1 mRNA downstream 19021 21952083 ~ 21955085 (-) True si:dkey-71d15.2
XM_039778397.1 mRNA downstream 19022 21952083 ~ 21955084 (-) False si:dkey-71d15.2
XM_039778398.1 mRNA downstream 19139 21952083 ~ 21954967 (-) False si:dkey-71d15.2
XM_039777997.1 mRNA downstream 31817 21937519 ~ 21942289 (-) True LOC120544344
XM_039777682.1 mRNA upstream 31200 22016006 ~ 22017768 (-) False zgc:153704
XM_039777681.1 mRNA upstream 31200 22016006 ~ 22017766 (-) True zgc:153704
XM_039776639.1 mRNA upstream 36150 22020956 ~ 22028017 (-) False LOC120543538
XM_039776638.1 mRNA upstream 36150 22020956 ~ 22028017 (-) True LOC120543538
XM_039778221.1 mRNA upstream 45488 22030294 ~ 22036596 (-) True LOC120544462
TU226981 other downstream 232302 21733840 ~ 21741804 (-) False brd8a
XR_005636498.1 other downstream 232325 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other downstream 232325 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other downstream 232325 21722318 ~ 21741781 (-) False brd8a
TU226908 other downstream 389924 21574218 ~ 21584182 (-) True G167416
TU227181 other upstream 12153 21996959 ~ 21998648 (-) True G167589
TU227308 other upstream 455524 22440330 ~ 22446756 (-) True chrdl2
TU227366 other upstream 481777 22466583 ~ 22468593 (-) False mepcea
TU227367 other upstream 481777 22466583 ~ 22468593 (-) False mepcea
TU227368 other upstream 481777 22466583 ~ 22468593 (-) False mepcea

Expression Profile