RNA id: XM_039778397.1


Basic Information

Item Value
RNA id XM_039778397.1
length 1664
RNA type mRNA
GC content 0.42
exon number 7
gene id si:dkey-71d15.2
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21952083 ~ 21955085 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACAAAGTCATCATcctttctgcttttctttctccCAATACTACAAACATCACTGTTTGCATAACTGCGCTCCAGTTCGTCCCTTTAAATACACCCCTCGCCCTTCAGCCTGTGACGGCCTTCGCTCTGCCCCAGTGATATTTGTGAGCGGAGTGGAGCTAAACTTAGCCCTGACAGTAGGCTACCACTCGTCATCACAACATACTCAGCAGACCACAGTGGGTTACAATGGACAGTGTCGCGTTACCACAGATGCTGCTGTATCTCACTGGTGTCGCTGGCCAAACAAGATGTAGACTTAAAGACTGCAGGCTTTTCTGTCTTTCACTCTCTACACTTGTATTCCTCTCTGTCACGATGGGCAGCTATAGCTCAGCCCTCATTCCTGACACTGAAGAGTTTGATTCAGTTGTGTCGATGGCAGAGAAGCTGAATGAGCAGGTAGCTCATGCTGCAGATGAGAGGTTACAGTCAGAGCTTCAGACTCTGGTAACACTCATGAtggaggaggaaagaaaagaaaaccagagtgaagagctggatTCTTTAACACTTCAAGAAAAATCTCAGGAAACAAGCCACAATGGTTCTGCCCTGCCTGTAAATGCAGCAGCATCCAAAAGTGTTCCCATGCAGTCCTTCATCTCCCTGTTACCCAAGGCTCTCTCTGCTGTACTACATCCGACGCTGCCCCCACACATCAACTCCGACCCCCAGCCGAGCAGAAATCCACTGAGCCTGCAACAACTGCAGACAGACCTGAGAGACCTGAGGGACCAGTTTGAACTGATGAAGAGTCAGCACAACAAAGAAATTAAACTGCTGATGAATGAGCTTGATGAGGAGAAAAGGATTCGCTTGACTTTACAGatGGAGATTCAACGTATGAAGAAGCACATGTCTAAATGAGTGGAGAACTGCACCATCATTAAAGACAAATTTTAAAGGTCCTGCTGTATACTTATGTGATAAACAATATTTTTCTAAGTTTTAAAAAATCATCCTCGTTTGATGAAAAGTATCATATTTAGCAAttttatttgcttttgtttttgttggaccGGCAAATGCGTCGGCCTAGAGGACCGAATGTTTTTACTGAATCATTGCTGAAAGTTAAAAGGTGAGGAACAGTGGGATCAGACTTGATATAAGAGAAGAGTATCTGTTGACCGTTCTCTCTGGAAATGAGCAGTAGACGGCCCTGTTATACattcaatttgttttatttctgtagATGGACTTAATAACTATGGCATCTTAAATCCTGTAGTGGGGTAAATGTTTTCCATTTAGGTTTCCATGAAGAGAATCTTTTCGTTTCCCATAGCTGTTGGCCTAAATATGTGTTGGAGATCATCACTGTTGAATTGGTTTTCTAATAATTTTTCCTTTATCCGGCCGTGTAGAAAACATCTGACAGTGAAACAGAGAGGACATGTAATAAGAGCCAGCAGCTAATCAGCTATCATTAGTTTATAATAATGTGATGTTGAGGCGCAAACTTGAAGCTTCTATCATATTTAAGGTGCATatagttttcaaaaatgtatgtTTGCCTTTTTATCGTGCCAAACATTTACTGACCAAGATGTCAGtgaattcatattcatgttgTTGATGTGTAGGAGCACTGTGAATTCATTAAAGATGTTGCACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227149 lncRNA downstream 14143 21937693 ~ 21937940 (-) True G167580
TU227049 lncRNA downstream 103440 21844697 ~ 21848643 (-) False LOC120543962
TU227048 lncRNA downstream 107400 21844151 ~ 21844683 (-) True G167515
TU227029 lncRNA downstream 157544 21792110 ~ 21794539 (-) False G167498
TU227185 lncRNA upstream 31535 21986619 ~ 21987487 (-) True G167590
TU227187 lncRNA upstream 35862 21990946 ~ 21994466 (-) True G167591
TU227186 lncRNA upstream 37609 21992693 ~ 21994466 (-) False G167591
TU227147 lncRNA upstream 57615 22012699 ~ 22015678 (-) True G167579
TU227285 lncRNA upstream 263022 22218106 ~ 22225686 (-) False zbtb20
XM_039777997.1 mRNA downstream 9794 21937519 ~ 21942289 (-) True LOC120544344
XM_039778299.1 mRNA downstream 23655 21921207 ~ 21928428 (-) True LOC120544506
XM_039778128.1 mRNA downstream 32702 21915529 ~ 21919381 (-) False LOC120544412
XM_039778127.1 mRNA downstream 32895 21915529 ~ 21919188 (-) True LOC120544412
XM_039778129.1 mRNA downstream 40078 21907474 ~ 21912005 (-) True si:ch211-244c8.4
XM_039778655.1 mRNA upstream 1194 21956278 ~ 21971163 (-) True si:ch211-114c12.2
XM_039778659.1 mRNA upstream 16871 21971955 ~ 21984810 (-) False map7d2a
XM_039778658.1 mRNA upstream 16871 21971955 ~ 21984808 (-) False map7d2a
XM_039778656.1 mRNA upstream 16871 21971955 ~ 21984808 (-) True map7d2a
XM_039778660.1 mRNA upstream 16871 21971955 ~ 21984807 (-) False map7d2a
TU226981 other downstream 210279 21733840 ~ 21741804 (-) False brd8a
XR_005636498.1 other downstream 210302 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other downstream 210302 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other downstream 210302 21722318 ~ 21741781 (-) False brd8a
TU226908 other downstream 367901 21574218 ~ 21584182 (-) True G167416
TU227181 other upstream 41875 21996959 ~ 21998648 (-) True G167589
TU227308 other upstream 485246 22440330 ~ 22446756 (-) True chrdl2
TU227366 other upstream 511499 22466583 ~ 22468593 (-) False mepcea
TU227367 other upstream 511499 22466583 ~ 22468593 (-) False mepcea
TU227368 other upstream 511499 22466583 ~ 22468593 (-) False mepcea

Expression Profile