RNA id: XM_039778655.1


Basic Information

Item Value
RNA id XM_039778655.1
length 2547
RNA type mRNA
GC content 0.50
exon number 10
gene id si:ch211-114c12.2
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21956278 ~ 21971163 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTGTTGTGTTGAAGGGCGAGGGCCGAGCACCTATTTGCTTACGACGAAGAAAAGTAGCCCAACTGTGTCGCAGTCGCATGCACTACCTATCTTTCATCTAAACGACGGTTTGTCTTTGATTATTCACTCACTTCCAAAGATGGTTCGACCACAATTTGGACCACCACGTTTGAAGCCCAGACCTTACGGAGATGGTCATGGCATTGGACCTAGTGAAGGGAATTACAACACTAACTCCAAAAGTCGAAGAGATGTCCAGGGCTACCCAGCAAAGGCCCCTTTTCACTGGAGGGATTCCAGAGGTAGAGGACGACCCCCAGTTGTCAGAAGAGTACCCCTGATGGGAGAGCAAAGAGAGCCACGTTTCAATCATTGGAGGTCCCAAAATCAGGATTCCTTTCAATCACACCCTCCCAAAATGGAACCACATCATAGCCAGAGGAGGCCTTCTCCATCTCGGCCAAACCGCCCCCCCCATGTCCAGCATCAGTCCTCCCCTCGCAGTCTTGCTCAAGGATCCGTGAGCCAAAGGGGCCCACCTTTCCATGGCCACCCctcaggtcagaggtcacccTCCCCAAGACATTTTCGCAACCACCCAGCCGACAGGAGGCCAGGCTCTACACCAGCCTACCAGGGGTCTTTCAGGGGCCCCAAAAGGCAGTCAGGTTTTCAGCATCAGGAGCAGCGGAGTCGAGGCCCTCGTGGGAATTACAGTCCTAGAGAAAGGGCCCATGAGCACTCAGGTCATGGCATGAAGCGCTGGAACGAGGCAGGAGCGTTCTCTCATCCACACAATGGAGAACATGGGCCCTCTGGGTCACAGAGGAACCCCAGAGAGATGCATGGGAGAGGCTCATGTCCAGAGAGGTGGTCATCTGAGCAAGACTCCAGGCGGCAGCGTGGTCCGGTGGAGAGGCAGGGCAGCAGATCCAACAGTAGAGAGAGGGCTCAGGATGTCCCTCACCTGCCCCCTTTCAGATCCCCCTCATGGAAAGGAGGTCCATCACCGTCATCTTCATACCAAAGGGGCCCTCAGGAGAGGCAGATGGCAGGACCCCGTAAGAGGAGGATATCAGGAATCAGCATGCCCTCCTCAGACCCTGCACTGGAGCATGGCAATCCTAAACACCCCAGGAGAGAGAGGCCTCAGCTGCTCAGTATTCCCAGGCCATTCGTTGGTAAAACTTTGTCTCTTAGGGATAGAAGTTTCCTGGTTAAGAGCAGACAAGTCGGAGCAGAGTCTCTCATGGGGCTCCGAATACCTCCATCTGTGAAACCCAGGCCTCATCTGGCTGACTCTGCCTCACAAGAAAACTTCAGCTCTGTTCTTGCTATCAGGAAGAAACGTTTCCAGTCAAATGCAGTTCCCCTGAAAAAGCTGGAACCAAGGAGGGGAAAACCACAACAGTCACCCCCCAGAGAAGAAGGCAATGCCAGCAAGTCTTCAAGAGACTCTGATACAGGCAAAGAACAGGTGGAGTCTCGCCGGTCCTtgaacacacacagATCTTCTCCCATAGAGAAACGTGACCTTGTTATTTTGTCCCACTGGCCACCTGGGCCGAGCTCCTCCTCTAAGGACGGCTCACCTACGAAAGATCGCAGCCCAAAGCAAAAGAATGaaCGCAGTTCAGGTCAAGGTGCCGCACCAAACAGCCGACTATCAAAGACAAATGATTCCAGATCATTGCCTGAAGACCGAAGACGAGGCTTTATGGATAAGAGGGTGTTTAGGCCATTTAATACGATGCAGGACAACCAGAGAGCCGGGAGGCCCTTTAGgagaccaggaccaggacccaTGCAGAGACCAAAGTTCACCGTTGGTCCAAGGAAGATGGGCCCTGAACCGTCTGGAAATTTTAGAAGACCACTCATGGAGAGCTTAGTGCCACGACCCTTCCCAAATCAGAGGCCAGTATTCAGGAAAAGTCACAGTATCATGTCCAAATACCGCACCATGAGAGTAATGCGTCAGCGTCCACCATACAACCGAGGACCCAACCAACAACGCTGGTGATAACCCCTGCACAGGTCTCACATTCTGCGGACACGATTCTGGAAAATCTCATCAAGATCTTCTCTGCTGGGTGGACTGCACAAACCCTTCTCTCACTACAATCCCATCCTGCCTGTATATTGTGGAAGTGTTGTTGCTTACAGTTGTTTTCTGGTACAAATGTTTCACTTGCATATAAGTACTGCAGTACTTATGTTTTAGATATTTGTAACGTATGGCATTACATGATGCTGTCCCGTGTAATTATTTAAGAGTTTCTGCTTGTGATCTTGGCAGTCTTGATTTTACTGAAATAGATttagctttttctttgtttaccaGCAGCTATCGTTTTTAAGTTTGTAAAGTCCAAAGAAACCTTTGTAAAAGACTTAGCCCATAAGATGTCTCCTGTTTGATTAATCATGGTTGTTTTGATTAGAAACAGCAGTTTGTCTACTGACGCTTAGCTACTACTTGTAAAACTTGTATAATCACATGTCAGTTTGTTTCAGActtgaaataaaatcaaatTTAACAAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227149 lncRNA downstream 18338 21937693 ~ 21937940 (-) True G167580
TU227049 lncRNA downstream 107635 21844697 ~ 21848643 (-) False LOC120543962
TU227048 lncRNA downstream 111595 21844151 ~ 21844683 (-) True G167515
TU227029 lncRNA downstream 161739 21792110 ~ 21794539 (-) False G167498
TU227185 lncRNA upstream 15456 21986619 ~ 21987487 (-) True G167590
TU227187 lncRNA upstream 19783 21990946 ~ 21994466 (-) True G167591
TU227186 lncRNA upstream 21530 21992693 ~ 21994466 (-) False G167591
TU227147 lncRNA upstream 41536 22012699 ~ 22015678 (-) True G167579
TU227285 lncRNA upstream 246943 22218106 ~ 22225686 (-) False zbtb20
XM_039778396.1 mRNA downstream 1193 21952083 ~ 21955085 (-) True si:dkey-71d15.2
XM_039778397.1 mRNA downstream 1194 21952083 ~ 21955084 (-) False si:dkey-71d15.2
XM_039778398.1 mRNA downstream 1311 21952083 ~ 21954967 (-) False si:dkey-71d15.2
XM_039777997.1 mRNA downstream 13989 21937519 ~ 21942289 (-) True LOC120544344
XM_039778299.1 mRNA downstream 27850 21921207 ~ 21928428 (-) True LOC120544506
XM_039778659.1 mRNA upstream 792 21971955 ~ 21984810 (-) False map7d2a
XM_039778658.1 mRNA upstream 792 21971955 ~ 21984808 (-) False map7d2a
XM_039778656.1 mRNA upstream 792 21971955 ~ 21984808 (-) True map7d2a
XM_039778660.1 mRNA upstream 792 21971955 ~ 21984807 (-) False map7d2a
XM_039778661.1 mRNA upstream 2943 21974106 ~ 21984806 (-) False map7d2a
TU226981 other downstream 214474 21733840 ~ 21741804 (-) False brd8a
XR_005636498.1 other downstream 214497 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other downstream 214497 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other downstream 214497 21722318 ~ 21741781 (-) False brd8a
TU226908 other downstream 372096 21574218 ~ 21584182 (-) True G167416
TU227181 other upstream 25796 21996959 ~ 21998648 (-) True G167589
TU227308 other upstream 469167 22440330 ~ 22446756 (-) True chrdl2
TU227366 other upstream 495420 22466583 ~ 22468593 (-) False mepcea
TU227367 other upstream 495420 22466583 ~ 22468593 (-) False mepcea
TU227368 other upstream 495420 22466583 ~ 22468593 (-) False mepcea

Expression Profile