RNA id: TU227147


Basic Information

Item Value
RNA id TU227147
length 2030
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G167579
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 22012699 ~ 22015678 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaatactttgcttttattaacttttttaacaaatacgtTGAGTACATCCATAACAACACagttcagattttctttttatcaaGTGTTCACATCTACACGCTTTGTACAGATTTGTatacaaaacaataatttaCGTCCCATAGAAGTCTAGTTACACTTAACTATACAACAActtgtaaatgaaataaatataaaaacaggaaTAATCACAGGtgataacaaaaatgtaaaaagccaCAcacacacacacacacacctttaccaAGATGGCAAGTGCTACTGGAAACAGGTTGCTAATCTATACTGCTGTGTTTTGTAAATTTTAACAAAATGATGCAAAAGATTAGCAAATTACACTTCAGTTTGAGACAAATAATTAGGACCATTGTGATTGACGACTGATTTCTGCctgcaaaattaaaaatgtatatctaCAAAGAGACATCTGCACAATCTGCCATGCACACTGTTACCAGCAAAGGGACATGCAGTTAAAAGTGCAAGTCTACGGAGGGGTTCTGTTGCCAACTTGGACAAAGCATTAATGTTATGtacatgtgtatacatttcTGAACATTAGGATGAGGATCAAAAAAGAGCAAAACAGAACAGACTAAGTGCAGCACGTCACATTATTTCAATATGACTGGTGTTGTGCCGAGGGTGCAGAGAATGGGGTGATGGTTGCTTTGAACATTGTTCTTTGTTGTGGCACAGGATTTGGCTCGGTCAGAGTCAATCTGCCTGCACTACGTCCTTGTGGTGGCGCATGATATGCTGGTTCTTCTCCGAGGGTCGTCGGAACCCTTTCGAACAGATCTCGCAGCGGTGCGGATAGTCTTTTGTGTGAATGGAAATCACGTGTCGCTTGAAACCCGATGCGTCGCCAGTGCTGTAGTCACAGTACTGGCACTGGTAAATTCTCCTTTCTTTTTGTCCTTTGCCAATAACGACAGTGACACTGCTGGCTAAGCTGGCTGCACTGACTCTGccaggcgggccagaggcgctGGACGCGCTAGGTGCAGACTTTTTAGGTGTCACAACGGGAGCGTGCGTCTCTGTCCTCTTAGACTCACTCTTTTCAGGAGAGGCCTGTTGCTCCTTTGTGTGGACAGACAAGATATGGCGACTGAGAACAAAAGGGTCTGCAATTTTGAAGTTGCAGTGCCGGCATTGATGGAGTTTCTTGGTGCGGTGGGATACCGAGTGCTTCTTTAGTTCAGACGGCCGGTGGAAACCTTTACCACAGATGGCACATTTGTGTGGATAGTCCTTGGTGTGAACAGATATGATATGGCGTTTCAGGTCACTGGAGTTGGAACTTTTGTGATCACAGTGGGCACAATGGTGGGTCTTATTCTCTTCGTGTGTTAGTCCGTGCTGCAttaactcctcctcctctgcaaaGGTCTGGAAACAGCGCTCACATTTGTATGGCATCTCTTTGCTATGCTTAGTCTTGATGTGCGTCTTGAGATTAGAGGAATCGGCCGACTTGTAGTCGCAGTACAGGCAGGAGTAGGGCTTCTCGCCCGTGTGCGTGCGCATGTGTTTCTTCAATTCTGAAGGGTGTCGAAAGCCTTTTCCACATTCCACGCAGATGTGGGGGAAGCTTTTACTGTGAACTGCCAACAAGTGCCGATTGAGCAGTCCTTGCTCAGCTGTTTCATAGTCACAGAACTTGCATTTATGCATCTTGTTGGGCGTTGGAGGCGGCTGGCTCTTGGGCTCTCGGTGGTGGTGCTGCAGTCTGTGAGAGAACAGCGCCGCCTGCTGGTGGAACTCCTTGCCACACATTTCACACTCGAAAGGGGCCTTGCTGCTCAGAGCGTGCACCTCCATGTGGTTGTGGAGGCTAGCTTTCTTGTTGGTGGTGAAGTCACAGTCTGTACATTGGTACTTTTTCCTTGTCAGAACATCCTGGTGATGATTCTTGGTGTGGCGTTTCAGGAAGCCTCGTGACTTGAACTTTTTACCACATAGCATGCAGGGGTAAACGGTCAGAGGCTGACCATATGGACCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227187 lncRNA downstream 18233 21990946 ~ 21994466 (-) True G167591
TU227186 lncRNA downstream 18233 21992693 ~ 21994466 (-) False G167591
TU227185 lncRNA downstream 25212 21986619 ~ 21987487 (-) True G167590
TU227149 lncRNA downstream 74759 21937693 ~ 21937940 (-) True G167580
TU227049 lncRNA downstream 164056 21844697 ~ 21848643 (-) False LOC120543962
TU227285 lncRNA upstream 202428 22218106 ~ 22225686 (-) False zbtb20
TU227298 lncRNA upstream 282180 22297858 ~ 22333330 (-) True G167678
TU227312 lncRNA upstream 360579 22376257 ~ 22376520 (-) True G167690
TU227313 lncRNA upstream 360937 22376615 ~ 22377167 (-) True G167691
TU227314 lncRNA upstream 361540 22377218 ~ 22377446 (-) True G167692
XM_039778659.1 mRNA downstream 27889 21971955 ~ 21984810 (-) False map7d2a
XM_039778658.1 mRNA downstream 27891 21971955 ~ 21984808 (-) False map7d2a
XM_039778656.1 mRNA downstream 27891 21971955 ~ 21984808 (-) True map7d2a
XM_039778660.1 mRNA downstream 27892 21971955 ~ 21984807 (-) False map7d2a
XM_039778661.1 mRNA downstream 27893 21974106 ~ 21984806 (-) False map7d2a
XM_039777682.1 mRNA upstream 328 22016006 ~ 22017768 (-) False zgc:153704
XM_039777681.1 mRNA upstream 328 22016006 ~ 22017766 (-) True zgc:153704
XM_039776639.1 mRNA upstream 5278 22020956 ~ 22028017 (-) False LOC120543538
XM_039776638.1 mRNA upstream 5278 22020956 ~ 22028017 (-) True LOC120543538
XM_039778221.1 mRNA upstream 14616 22030294 ~ 22036596 (-) True LOC120544462
TU227181 other downstream 14051 21996959 ~ 21998648 (-) True G167589
TU226981 other downstream 270895 21733840 ~ 21741804 (-) False brd8a
XR_005636498.1 other downstream 270918 21722318 ~ 21741781 (-) False brd8a
XR_005636499.1 other downstream 270918 21722318 ~ 21741781 (-) False brd8a
XR_005636500.1 other downstream 270918 21722318 ~ 21741781 (-) False brd8a
TU227308 other upstream 424652 22440330 ~ 22446756 (-) True chrdl2
TU227366 other upstream 450905 22466583 ~ 22468593 (-) False mepcea
TU227367 other upstream 450905 22466583 ~ 22468593 (-) False mepcea
TU227368 other upstream 450905 22466583 ~ 22468593 (-) False mepcea
TU227610 other upstream 794036 22809714 ~ 22810452 (-) True G167902

Expression Profile