RNA id: XM_039777166.1


Basic Information

Item Value
RNA id XM_039777166.1
length 2428
RNA type mRNA
GC content 0.43
exon number 7
gene id ntm
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 33568621 ~ 34100246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCTCCACGGGAAGACAAACGGACTCGTTCTCTCGCTGTgggatctcttttttttttatttctttttttcctacacCTCTTTAGCTGGAGACGATGTCTGTCCGGGGATactttgtcgctttttccaaaTGCACAGTTCTTCTCTCCCTGAGGATTTTGCTTCTTGTGCCTGCAGGGTTGCCGGTCCGCAGCCAAGGGGACTCTCACTCCGACAACAAAGTGATGGACAATATCACCGTCCGACAAGGAGAGACGGTCTTTCTCAGGTGTGCACAGGGGGACgttgtcacacacacagcatggctAAACCGCTCAAGTATACTGTACGCCGGAGAAGACAAATGGTCGGTGGATCCCAGAGTGAGTCTGGTGACCCTTAATCAAGAGGAGTTTACCATCAAGATTGAAAACGTGGACATGACAGATGAGGGCCAGTATGTGTGCGCAGTCCAGACGAGCAGTCGACCGAGAACCACCTCAGTGCACATCCTCGTCCAAGTGCCACCAGAAATCATCAACCTGTCGAAAGATATTGTGGTAAATGAAGGCTCCAATGTCACCCTGATGTGCCAAGCCAGCGGTAAACCAGAGCCTTCCATCAGCTGgaaactcctctcctcctcagGGGACCTGGGATCAGACGATGAGTACCTGGAAATCCCATCTATCTCCAGACAGAAAGCAGGGACGTATGAATGCACAGCTGTCAACGAGATTGACACAGCTGTCAAGACCCTAGACATCACCGTCAACTATGCTCCGACTGTGTCAGAGGGCAGAGATGTTGGAGTGACTCTGGGCCAAAGAGGAGTGCTGGAGTGTGAAGCTGATGCAGTGCCTGAGGCAGATTTTGAGTGGTATAAGGAGGACAGAAGGATCCTCAATGGCTTGCATGGCATGGAGATTGTGAGCACTGGATCGCTGTCGAAGCTGACATTTTTCAATGTGTCTGACGGAGATTACGGCAACTACACTTGTGTCGCCGTCAACAAACTCGGGAGCGCAAACACAAGCTTCCTTCTGTATGGGCCGAGAGCAGTTCAGGATGGCAGCGGTGGCGCAATGGGAGTGCACTCACACACCTGTCTCCTCTTCATAGTGCTTCTGCCGTTCCTGCTCCGATTTTGAAGAGGAATGGATTTGAACACAAGTATTTTGGGTGCGAgcgtgtgcgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtgtgtatgtgtgtgtgtatatgtgtgtctgtgtgtgtgtgtgtgttttatttttatttttttcaaccgGAACCATAAACTGATGCACAGTGAGTGCATGAAGTATCCTGCTACGTAAAGTTGTTGACCCACTAAATAAGTACGTAacaaaagttttttgtttttagatttCAAGGATGTAACAAATGTTTCACATTTCAATTGAATTATGTTGGAATTTTTCTCTCTAAATTATATAATTCTGGATTATCTCTttttacatatactgtatgtctcggaagggggaaaaaaaaaaagttttttttaaatgtggtgtCTCTTATTCAAATGCATTTGTCTTAATTTTGAATCGCATTGCATATTCATCTCAACTCCAGGAAAAGGCTAATTTACAGCAAGTATGAGAGGTGAATATTAAATACCTCAAAGTCAAACCGAGACAGTGAAGCAGAAGGAATTTAGGTTACCCTGAGGCTGAAAGCCTGGTATTATCATATTTCAATGTATAATAATTATCATTCAGTCTGGTTGGTGAAAGAGAATTGTTTTTGACCTTCAAGTATTTTTGTTCCCAGCATTATAGTGATTGCAGTTGTGTCATgctaatattttaatttaatctttttttcaattatttagttttaaatatttttgagaAGGGAAAATATGAAGTTGTAATTATTTAGGACAAATATCCTAGttgtatgtcttttttttcttttctttactaGTACAGTTGTACACACAAAAATGGTGTCAAGAATAATTATGCTATAATTATGTGGTTAAAAATGGAGGAAGAGTTGTTTGGAGTCAACGTCTGACTTATACATAATGCAAACGTATTAATGCTGTTGCTACTTGTTTGAACACCATGCTATTTCTACACGACAGTTATTTGAGAAAATGCTCCTGTTCATGTTCCAAACCAGCACTGGAGGGTTAGAGACCACTCAGTGATGGTGCGTGTCCATTGTCAGCGCCATTTCTAtgggagcagccgtgcaatgcattctggtagcgtcgCGGGGACTTTGAAGAATCAGGGAGTTGAGtcgcccgctcctcatttgcataaagttgaatccagccaactttatgcaaggctcgccgcctctcaaaagctgacCTTTGTCgttctgaaatgaagacagattcaggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231364 lncRNA downstream 20682 33552719 ~ 33553032 (-) True G170679
TU231363 lncRNA downstream 21203 33552220 ~ 33552511 (-) True G170678
TU231358 lncRNA downstream 67900 33501280 ~ 33505814 (-) True G170673
TU231306 lncRNA downstream 480396 33093028 ~ 33093318 (-) True G170627
TU231305 lncRNA downstream 512014 33061482 ~ 33061700 (-) True G170626
TU231388 lncRNA upstream 373066 34107514 ~ 34107803 (-) True G170696
XR_005636404.1 lncRNA upstream 403472 34137920 ~ 34139893 (-) True LOC120543853
TU231401 lncRNA upstream 486204 34220652 ~ 34223226 (-) True G170709
TU231500 lncRNA upstream 499467 34233915 ~ 34235537 (-) True G170793
XR_005636379.1 lncRNA upstream 677354 34411802 ~ 34413193 (-) True LOC120543660
XM_039777410.1 mRNA downstream 185306 33385414 ~ 33388408 (-) True LOC120543965
XM_039826459.1 mRNA downstream 689047 32876288 ~ 32884667 (-) True tmem218
XM_039777946.1 mRNA downstream 705645 32829315 ~ 32868069 (-) False robo4
XM_039777120.1 mRNA upstream 501457 34235905 ~ 34277162 (-) False jhy
XM_039777119.1 mRNA upstream 501457 34235905 ~ 34277162 (-) False jhy
XM_039777118.1 mRNA upstream 501457 34235905 ~ 34277162 (-) True jhy
XM_039777121.1 mRNA upstream 543723 34278171 ~ 34282577 (-) True hspa8
XM_039777126.1 mRNA upstream 550113 34284561 ~ 34300129 (-) True LOC120543837
TU231185 other downstream 1082409 32443286 ~ 32491305 (-) True LOC120543978
TU231114 other downstream 1371508 32201709 ~ 32202206 (-) True G170463
TU230664 other downstream 2615216 30957501 ~ 30958498 (-) True G170098
TU230602 other downstream 2722701 30849319 ~ 30851013 (-) False LOC120543892
TU230603 other downstream 2743771 30829067 ~ 30829943 (-) False LOC120543890
XR_005636561.1 other upstream 544854 34279302 ~ 34279394 (-) True LOC120544758
XR_005636560.1 other upstream 546477 34280925 ~ 34281017 (-) True LOC120544757
TU231512 other upstream 574546 34308994 ~ 34309714 (-) True G170802
XR_005636548.1 other upstream 2003545 35737993 ~ 35738183 (-) True LOC120544743
XR_005636576.1 other upstream 2004021 35738469 ~ 35738586 (-) True LOC120544776

Expression Profile