RNA id: XM_039777554.1


Basic Information

Item Value
RNA id XM_039777554.1
length 6303
RNA type mRNA
GC content 0.51
exon number 41
gene id taf1
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 23737071 ~ 23754731 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTttccgctaacgttagcttagctgaCGGGGGTTCCTGCAGACTGCAGTACGCTGCAGTCCCTggtttacaaataaaaacaaaaaaagtttgtaCCAAACCTGGCTgtgaaaaaatgcatttttgtgtattttttcttttgaccTCACAATGCTGATACAGGCACATGTAGAAAGTATCTTTGAGTTGACGAGTAATTTTGTCTAGTGAAAATTAGCTAActcagctaacgttaacgttactttgcCTGGGTGAATTGAGCTGTAGCAGTTTAGCTGCTAGCATTCAGCAGATACAGCAAGCTGGCTGAAACCAAAGCGTACCAAATCTGAAGTTAGGTCACGAAAGTATGTCGGACTCAGACAGTGATGAGGATCAAGATCGCCCTTTCTCTCTTACTGGATTCCTCTTCGGAAACATCAATGAAGATGGACAGCTAGAGGATGACAGTGTTCTGGACAATGAGTCCAAAAAGCATTTGGCTGGTTTGGGTAGTCTGGGTCTGGGCTCACTCATTACAGAGATCACTGCCAATGAGGAGGGTGATCAAGATGAAAGCAGAGACTCTGGTAGTGTGGATGCAGAAGGTTGGGTGAAAAGCACGGATGATGCAGTTGATTATTCTGACATTAGTGAGGTTGCTGAGGATGAGACAAAAAAGTACCGTCAGGCCATGGGGTCTTTGCAGCCCAGCAGGAAAACAGATGACGAGGATGACTATGATGCTGACTGCGAGGATATTGATTCTAAGCTTATGCCTCCTCCGCCACCGCCAAGTCTTCCTACAGCTGCTAAGAAAGAGGAACCCTCCTCTCCGAGCACAAATGTTGGGGAAGAGGGGGATGGCATCATCCTGCCCTCCATCATCGCGCCATCCTCTACGGCTGATAAGGTTGACTTCAGCAGCTCCTCGGACTCTGAGTCAGAAACTGACCGTCCCTGCCAGGGTTTGGGGTCTGGAGGCCCCCCAGATAGTCTCAACCTCCCTCTTGCTGGCATCATGCAGAAAGATGCTGCCAAAGCGCTGCCAGGTGTCACACAGCTCTTCCCAGAGTTTAGGCCTGGAAGGGTGCTTAGGTTCTTACGACTGTTTGGTCCTGGAAAGAACATGCCATCCGTTTGGAGGAGTGCCCGCAGGAAGAAGAAGCGGAAGCACAGAGACCCTCAGCCTGGGACACCACCTCCAGAAGGAGAGCCCACAGAGCAAAGCCAGGAGAAGAAGTCTGGATGGCTTTACGAGTTCGCACCCCCTCCACCACCAGAGCAGTGTCTCTCTGATGATGAGATAACCATGATGGCCCCAGTAGAATCTAAGTTCTCACAAACTTGTGGTGATGGGGACAAGGAGGCAGAGTCTCGACCTAAAGTAGCAGAATGGAGATATGGTCCAGCCCAGCTCTGGTACGACATGCTAGGTGTCTCTGAGGATGGAAGCAACTTCAACTACGGCTTAAAACTAAAAGAACACCAGAGCAGTGAGCCTCAGCAGCAGGACACGCCAAAAGAAATAACAGAGGCTGCACATGAGTTTCTGAGGCGGGAGGCCGATGacaatgataataatgatgatgaagatAAGGAGTTATCAGCCCTTGAGAATGAGCTCTTCCTGATGGTCACTCAACTGAAATGGGAGGACGATATCATCTGGAATGGGGAGGACATAAAACACAAGGGCACAAAGACTCAGCGAGCCAGCCTGGCAGGATGGCTGCCCTCTAGCATGACCCGCAATGCCAACGCTTATAACGCCCAGCAGGGTCTAACAAGAAGTAATTCCCAGTTGGTGCCACCTACGCCTCCCCCCATGCCCAAAGTTTCTTCAATCTCTGGCTCTAAGCGTGAAAAAAACAGCCATGAAAATCAATCCTTTCAGGAAGAAGACTCTCCCTGGTTCTCCATTTTCCCCATTGACAGTGAGGAGTTAGTGTATGGACGCTGGGAAGATAACATAATCTGGGATGACCAGGAGATGGAACACATGCTCATGCCACCTGTTCTTACACTGGATCCCAATGATGAAAATATCATCCTAGAAATCCCTAATGAAAAGGAGGAGATGACTTCCCACTCCCCATCAAAAGAGAATAAGAAGGAAACAGCAATCAAAAAGAGCCGCATCCTGCTGGGGAAAACTGGGGTGATAAAAGATGAGCCACAGCAGAACATGTCCCAGCCTGAACAAAAGGACCCCTGGAACCTCTCCAATGATGAGTTCTACTATCCTAAACAGCAGGGCCTGAGGGGGACTTTCGGTGGCAACATCATTCAGCACTCCATCCCCGCACTGGAGCTAAGGCAGCCCTTCTTCCCCACTCACATGGGGCCCATGAAGCTGCGCCAGTTTCATCGACCGTCTCTGAAGAAGTACTCATTTGGATCTTTGGCTCAGCCCGGTCCCCATGCTGTTCAACCACTGCTCAAACACATTAAGAAAAAGGCCAAGatGCGAGAGCAGGAGCGACAGGCTTCAGGAGGAGGGGACATGTTCTTCATGCGAACCCCACAGGATTTGACGGGTAAAGATGGAGATCTGATCCTGGCCGAGTACAGTGAAGAATACCCCCCTCTCATCATGCAAGTCGGCTTGGCCACTAAGATCAAAAACTACTACAAAAGGAAACCTGGAAAAGATCCTGGAGCACCCGACTGTAAATATGGAGAGACTGTGTACTGCCACACATCCCCTTTCCTGGGTTCTCTTCATCCTGGACAGCTGCTCCAGgcCTTTGAAAACAACCTTTTCCGTGCTCCAATCTACCTGCACAAGATGCCAGAGACTGATTTCTTGGTTCTGCGAACACGACACGGCTACTACATTAGAGAGCTTGTAGACATAGTTGTAGTTGGTCAGCAGTGCCCCTTATTTGAGGTTCCAGGGCCCAACTCTAAACGAGCCAATACTCACATCAGAGACTTCTTACAGGTGTTCATTTACCGCTTGTTCTGGAAGAGCAAGGATCGGCCCAGGAGAATCCGCATGGAGGATATAAAGAAAGCTTTTCCCTCACACTCAGAGAGCAGCATCAGAAAACGACTAAAACTCTGTGCTGACTTCAAACGTACAGGGATGGACTCTAACTGGTGGGTGCTTAAGCCTGACTTCCGATTGCCTACAGAGGAGGAGATCAGGGCCATGGTGTCTCCAGAGCAGTGCTGTGCTTACTATAGCATGCTGGTGGCAGAGCAGAGACTCAAGGATGCTGGATATGGTGAGAAATCCTTCTTTGCTCCAGAGGAGGAGAACGAAGAGGACTTTCAAATGAAGATTGATGATGAGGTGCGGACAGCCCCTTGGAACACAACAAGAGCCTTCATTTCTGCCATGAAGGGGAAATGCCTGTTGGAAGTTACAGGCGTGGCTGATCCTACAGGCTGTGGAGAGGGTTTCTCCTACGTCAAAGTGCCCAACAAACCCACTCAACAGAAGgatGACAAAGAGCCGCAGCCTGCCAAAAAGACAGTGACGGGGACAGACGCTGACCTGAGAAGACTCTCACTGAAGAATGCCAAGCAGCTGCTGCGCAAGTTTGGCGTTCCAGAGGAAGAGaTCAAGAAGCTCTCACGCTGGGAGGTGATTGACGTGGTGAGAACCATGTCCACAGAGCAGGCGCGTTCAGGTGAGGGACCCATGAGCAAGTTTGCCAGAGGCTCTCGTTTCTCCGTTGCGGAACACCAGGAGCGCTACAAGGAAGAGTGCCAGAGGATCTTTGACCTGCAGAACAAAGTGTTAGAGTCGACAGAGGTGCTctccacagacacagacagcagcTCGGCGGAGGACAGTGACTTTGAGGAGATGGGGAAGAACATTGAGAACATGCTTCAGAACAAGAAGACCAGCTCCCAGCTTTCCCGCGAGagggaggagcaggagaggaaggaaCTGCAGAGGATGCTAATGGGCGAGGAGAGCGACCGTGACCACAAGGGACGCAAGGAGCGACGCAAAGGCTTGTCCAGCTCCTTATCCACCAGTTCACACAAGGACGATGACACTTCCTCCGTCACCAGCCTAAACTCCTCGGCCACAGGACGGCGTCTCAAAATCTATCGCACCTTCAGGGATGAGGACGGCAAGGAATATGTTCGCTGCGAGACAGTTCGCAAGGCTTCTGTCATTGACGCCTACACCAGGATCCGAACCACCAAGGATGATGAATTCATACGAAAGTTTGCCCTCTTCGATGAGCAGCACAGAGAGGAGATGAGGAAGGAGCGCCGGCGTATTCAGGAGCAGCTGAGGAGGCTGAAGAGAAACCAAGAGAAAGACAAGATCAAGGGACCTCCAGAGAAGAAGGCCAAGAAGGTCAAAGAGAGACCAGACCTCAAGTTAAAGTGCGGAGCATGTGGAGCCATTGGACACATGAGGACCAACAAGTTTTGCCCGCTGTACTATCAGACCAACGCCCCACCTTCTAACCCAGTTGCCATGacagaggagcaggaggaggagctggaAAAGACCGTCATCCACAACGACAATGAGGAACTGATCAAGGTGGAGGGCACCAAAATTGTGTTGGGCAAACAACTCATTGAAAGTGCTGATGAAGTGCGCAGAAAGTCTTTAGTGCTCAAGTTCCCCAAGCAACAGCTCCCACCAAAGAAGAAGAGACGCGTAGGCAATGCTGTGCACTGTGACTACCTCAATAAACCACACAAGGCCATCCACCGCAGACGCACGGACCCCATGGTGACCTTGTCTTCTGTGCTAGAGAGCATCATCAATGACATGCGGGATCACCCTAATACATATCCATTCCACACACCAGTAAATGCTAAGGTTGTGAAGGACTACTATAAGATCATCACACGGCCCATGGACCTGCAGACGCTAAGGGAGAATGTACGTAAGCGACTGTACCCATCCAGGGAGGAGTTCCGTGAAGCAGTGGAGGTTATCGTCAAAAACAGCGCCACCTACAATGGGGCAAAACATCCAATAACACAGGTAGCACAGTCCATGCTGGACCTGTGTGATGCTAAACTGAAAGAGCAGGAGGACAGGCTGGTAAGGCTGGAGAAAGCCATCAACCCCTTGCTGGATGATGATGATCAGGTGGCCTTCTCCTTCATTCTAGACAACATTGTGACCCAGAAAATGATGGTGGTTCCCGATTCATGGCCATTTCACCATCCTGTCAACAAAAAGTTTGTGCCTGACTATTATAAGGTGATTGTAAGCCCAATGGATCTGGAGAACATCCGCAAGAACATCTCCAAACACAAATACCAGAACCGAGATGCGTTCCTTTCAGATGTCAGTCTCATTCACGCCAACAGTATCAAGTACAATGGCCCAGACAGTCCTTACACCAAGACAGCTCTGGATATTGTCAATGTGTGCAAGCAAACCTTGGCAGAGTATGATGAGCACTTGACCCAGTTGGAGAAGGACATCTCTACTGCTAAAGAGGCAGCTCTAGATGCAGCTGACTTGGAGAGTCTGGACCCATTGACGCCTGGGCCATACACACCGCAGCCTGCTGATCTGTTTGACAGCGGGGCTTCAGGGAGTCTGCCCAGAGAGACCAGCAGCATTTTCTCTGAGGGACCTCTAGTAGTTGCTCCAGAGAAGAGAGGGGGGCAGGGTCGCCACGGCAGAAGACCCGGGGAGGAAGAGTCAGATGTGGACATTGAAGGCTTTGAGGAGGAAGATGATGGCAAACCCAAAACTCCTGCTCCTGCAGAGGATGCAGACAGAGATCTAGAGGacgaagatgatgaagaggacaTGTTGCTGCCGCCTCGCAGACGGGTGCACGaccaagaggaagaggaggaggaggaggaagaggacggaCTATCTAACCGCCCAGCCCAAGCCAGCGTGCTGTACCAGGATCTGCTCATGTCTGACGGAGAGGACGATGCCAGTGAAGAGGAGGGCGACAACCCTTTCTCCTCCATACAGCTGTCGGAGAGTGGGAGCGATTCTGATAGAGAGTTGGATGTGCGACCTGCACCTCCACGGAGAGCTCAAGAGACGGCCCGCATGGGCATGGAGCAAGATGAGAGCATGATGTCATATGAAGGGGACGGGCCTGATGGGCCTCCCATGGAAGACAGCAATGTCAGTTACGGCAGCTATGAGGAGACAGAGAGCCGGAGTCACATGCAGCCCTCTAGCATGGGGAACGGAGAAGACTACGGCATCagcgaagaggaggaggaagatgaagaagatgaaGCACGGAGGAGAGGCCCAGCTGTGCTCTCCCAGGTCCAGCTCAGTGAAGACGAGGAGAGCGAAGAATTCAGATCTATAGGGGGAGACAGCGACATGGACTCTGACAACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227962 lncRNA downstream 131461 23605559 ~ 23606305 (-) True G168161
TU227913 lncRNA downstream 282700 23450693 ~ 23455066 (-) False mink1
TU227911 lncRNA downstream 282700 23450913 ~ 23455066 (-) False mink1
TU227912 lncRNA downstream 282700 23451122 ~ 23455066 (-) False mink1
TU227917 lncRNA downstream 309705 23427557 ~ 23428061 (-) False slc12a9
TU228084 lncRNA upstream 8817 23763547 ~ 23764139 (-) True G168238
TU228248 lncRNA upstream 350852 24105582 ~ 24108489 (-) True G168351
TU228274 lncRNA upstream 419096 24173826 ~ 24174101 (-) True G168365
TU228357 lncRNA upstream 571701 24326431 ~ 24327158 (-) True G168431
TU228390 lncRNA upstream 574779 24329509 ~ 24330155 (-) True G168452
XM_039778060.1 mRNA downstream 9205 23718767 ~ 23728561 (-) True slc6a7
XM_039778563.1 mRNA downstream 19888 23697334 ~ 23717878 (-) False rb1
XM_039778562.1 mRNA downstream 19888 23697334 ~ 23717878 (-) False rb1
XM_039778561.1 mRNA downstream 19888 23697335 ~ 23717878 (-) True rb1
XM_039778554.1 mRNA downstream 41540 23686225 ~ 23696226 (-) True LOC120544653
XM_039777531.1 mRNA upstream 1313 23756043 ~ 23762280 (-) True fam76b
XM_039777533.1 mRNA upstream 9511 23764241 ~ 23771228 (-) False mtmr2
XM_039777532.1 mRNA upstream 9511 23764241 ~ 23771227 (-) True mtmr2
XM_039777382.1 mRNA upstream 17510 23772240 ~ 23774782 (-) False cwc15
XM_039777383.1 mRNA upstream 17510 23772240 ~ 23774665 (-) True cwc15
TU227963 other downstream 119645 23617275 ~ 23618121 (-) True G168162
TU227941 other downstream 137492 23596899 ~ 23600274 (-) False rnf167
TU227697 other downstream 584450 23150844 ~ 23153316 (-) True LOC120543557
TU227610 other downstream 927314 22809714 ~ 22810452 (-) True G167902
TU227368 other downstream 1269173 22466583 ~ 22468593 (-) False mepcea
TU228118 other upstream 48821 23803551 ~ 23811763 (-) False nlgn3b
TU228135 other upstream 166530 23921260 ~ 23925815 (-) False thoc2
TU228137 other upstream 166530 23921260 ~ 23925815 (-) False thoc2
XR_005636406.1 other upstream 167903 23922633 ~ 23948860 (-) False thoc2
TU228215 other upstream 219824 23974554 ~ 23976321 (-) True LOC120544713