RNA id: TCONS_00071046


Basic Information

Item Value
RNA id TCONS_00071046
length 1903
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_036349
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18242505 ~ 18316482 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTTTCGCTGTTTGTAATAATTTAGACAGTTTGAAAGCTGTTAGATGATGCGAATTGAATGTCCTTACCGCTAAAGGTGCTATATGATGTTTAACCAGTAGGTGGACTCCCGTGCCAGCGTGTGAGAGTCCCAACTAACCAATTCCGATGCAAAAAGGACGTTAGAAGCATTGGAAATATTTTGGTGGTCTTTCATATCCCTCATATGCACTGACATCATTCACTGTAGTTGAGGCGCAGAATGGAGATTTACATTTGACAAAATATCCAAGTCGAACTGGGAGGTAGAGGATGATAAATTTAAAGTTAACAGAGCAGCACGAGCTgtaaggagtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagcgagagagagagagagagagagagagagagagagagagagcgagcgagcgcgTGGCGGTACAGTGAGCGGCTCGCGCGCATTAACAGAGGTGCGCGCGGATCGGATGTTGACACATCACGCGCATCTGCATAATCTATATCACAGCGCTAAACAGCTAAACTCTTGTCAAAACTGTATAACAATTTTACCGCTCATTTCTCTTTAAGTTACGCTCATTTCTCTTTAAGTTATATTTTCCCACTGACATAATCTGGACTTGACCTTGGATAAAAGAACAGTTTTATCTGCGACTGAGAATAAGATGTTTGACTACAATATTCCTTCCATCAGAGGATGACTGGTCTGTGAGGCATCATTTTATAATCGTTGAGCTCAGTCTCCTTCACATCTTCTCATCTCATTACACTGAGTTCGCTGCTCAAATGGACCTCCACCGAACTGCCTTTAAGATGGAGAACTCCTCCTATATGCCCAGCCCGCTGACCTCTCCTGCCCTGATGGTCCTGGCATCGACAGCCGAGGCTGGACGAGATGCCTCCATACCTTGCCAGCCCCCTCGGCCGTTTGGAGTGCCAGTCACTCTGGAGAAGGACATGCACCTCTCATTTCCCAGCGGCTCGTACACATTTGCCTCCATGTACCATCGGCAAGGAGGCTTTCCCACTCGAGACTTTCCCACCCCTCTGCTCCACCTCCACCCACAGTTCGCTCCACCCAACCTTGACTGCTCACCTCTGGGTATGCTCAATCATGGTGCAGTGGGGGCATTCCGGCCGTTCTCCTCCCCACCTGAGGAGCGAGATGCAGGGCTTTATCAGTCTGCTTTTCTCCCTGCCAAGCGCTTGAAGGGCTGTCTGGATCCAGAGGCTTCACCTCACCTCCGCTACACAGATGTGGAGGGAAAAGATTTTGACTTTGGGGGTGCCCGTGTCCCCGCTGGCTCTCCAAATGCCCTGAAGGTAGCGGAGGATGCTGGGAAGAAGCTCTTCGGCTTGTCTGGGCTGTTGGTAGATGGCTCATCTGCCCCAGAGGAGCACAAAGAATCAAGTAAGGTGAAGGTCCTGTATGACACTCAGACACCAATGTGTCCGATCTGTCATGCTGTTCTGCGGTCAGGAGAGTTACAGGAGCACATGGAGCAGGAGATGGAGAGACTAATGCAGATGCACAACAGTCAGGGTCCTGCTCAGAAGGAGTGTCTCTCCGCTGGGCCGCCTAAGTCTCTGTTTTCTATGCACATAAAGAGAGAAGGTTCCTCTTCTGCCTCTTCTCCACGTCCTGCTGATGAGGCTGTGCACTCTGACAGGTACCAGACATTTTTGCGAGTACGATCGAACAGGCAAACGAGACTGAATGTTAAGGAGCTCTGCTGGTGCCGGTGCTACGCCAAACACAAAGTGAAATCTGGTCATGTTTGGCCTGACTGTGGATTCCCACATGCACCTTCTTGCCCACTTTCTGCACGCATTGGGAAGCTAAAAAGACGGAAAGCAGAAGAAGAGCAGGTATGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-195 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF220 (ring finger protein 220).

Ensembl:

ensembl_id ENSDART00000190156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071043 lncRNA downstream 19791 18230965 ~ 18239449 (-) False XLOC_036348
TCONS_00071040 lncRNA downstream 30411 18225039 ~ 18228829 (-) True XLOC_036347
TCONS_00071041 lncRNA downstream 33172 18225039 ~ 18226068 (-) False XLOC_036347
TCONS_00071031 lncRNA downstream 56050 18200751 ~ 18203190 (-) False XLOC_036345
TCONS_00071023 lncRNA downstream 255556 18000382 ~ 18003684 (-) False XLOC_036342
TCONS_00071059 lncRNA upstream 206578 18523060 ~ 18524122 (-) False XLOC_036353
TCONS_00071061 lncRNA upstream 207560 18524042 ~ 18532417 (-) False XLOC_036353
TCONS_00072437 lncRNA upstream 277585 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00072023 lncRNA upstream 455125 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA upstream 455125 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00071044 mRNA downstream 19742 18230965 ~ 18239498 (-) True XLOC_036348
TCONS_00071042 mRNA downstream 19746 18230948 ~ 18239494 (-) False XLOC_036348
TCONS_00071038 mRNA downstream 30031 18215823 ~ 18229209 (-) False XLOC_036347
TCONS_00071039 mRNA downstream 30033 18215900 ~ 18229207 (-) False XLOC_036347
TCONS_00071037 mRNA downstream 30071 18215737 ~ 18229169 (-) False XLOC_036347
TCONS_00071048 mRNA upstream 38003 18354485 ~ 18367203 (-) False XLOC_036350
TCONS_00071049 mRNA upstream 39620 18356102 ~ 18367736 (-) True XLOC_036350
TCONS_00071050 mRNA upstream 52695 18369177 ~ 18398787 (-) True XLOC_036351
TCONS_00071051 mRNA upstream 133570 18450052 ~ 18460791 (-) False XLOC_036352
TCONS_00071052 mRNA upstream 140231 18456713 ~ 18460726 (-) True XLOC_036352
TCONS_00071006 other downstream 1006886 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00070990 other downstream 1593594 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 1602154 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 1646131 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 1646359 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00071054 other upstream 198558 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 206599 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 268211 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 898243 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071076 other upstream 898347 19214829 ~ 19216657 (-) True XLOC_036363

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_03721429_03756576.mRNA True 1683 mRNA 0.53 14 CI01000010 3721429 ~ 3756576 (+)