RNA id: TCONS_00071052


Basic Information

Item Value
RNA id TCONS_00071052
length 2012
RNA type mRNA
GC content 0.37
exon number 7
gene id XLOC_036352
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18450052 ~ 18460791 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTCCgtaaaaatgattcatttgagtTGCATTACTTTTCTTCCGAAGCGTAGTTTTAGTTTTGaactttgaatattttaactACAAATATGCTGTAACTCCTGCTCACAAAGGAAGAGTTTAGTTTATCACCGATGTCGCACAGCACATACAATTCACTCTGGTCCGAAGCTCATGAGGAGCTCAGCTGTTTGCTGCCTCAAGAACTTCCAGAAGAGCCTATTCGCCCTGAGAGAGACAGAGTGGTGTTCTTCCAAAGGATCGCCACTTTCTATGTTCGCTATGTGCAGATCTTCAGACACCTGGAAGAGGCCTATGACCAAAGCGTTCACCCCCAAAAGAGGCGTGTAATTAGGCAGGTGCTGGACAGTGTGATGGGCCGTGTTCTGGAGCTCAAGAACGAAATGGTGGAAAAGGAATTTTCAGAGTACCACTATATGGACGACGTCATCCAAGACCTGAAATTAACCCCTGAGGACCTTGAGATTCCAATTCCCAGGTATTTTATTCGTGAGCGTAATAAAGTGCTGCAGGATAGAGAGAGAATGTTTGCTGCTATATTAAACCAAATGGATGTCATGGAAAAGTCAGGACCTCCTGTGATGCGGATGTTGACCCTGGAAAGGACTATTAAAGTCATTCAAGTGGCTGAAAGAGCACGGCAAGGTCGACTGAGGGCAAAGTTCATGAGAGAGATCCATAGAGACTCTGAGAGACAAAAGAGAGCTGATATAGAGACAGTTAGTTCTGACCAGGCAGCAGTTTGTATCCAGAAGGTGTGGAGAGGCTTCATGCAAAGAAAAATAACTAAAAGGTTACGTGAGGAGGAAATGATTTTCCTTGGAATGGCACTGGATCCAAAACTATCCTATCCATCCCAAACTGAGCTGATTGCCCAGAACAATAAGGCCTTGAGGCGGACCAGGCAAGAAGAACACGAGGATGACTATCAGAAATCCATTGGATCTGTTGTTCATCAGCTCAGGGAAGTGGAGGGCTCAGAAATGAAAGAGACCATGAAAGATCAGATCCGACAGTGGTTCATTGAGTGCCGTGATGCAACAGGCTCATTTCCTGACTACCCAGAGGAGGAGGATGGAGGATCAGCTCTTATATTCGCAGAGAAAACACCTGAGGAGGTAAACACATTGTCATGTGACTATCAATCAATTCATTTTCAATCAAAACTAAATATAGAACAGGCTTAGATgtagattaatataataataataattagaatcattaaatataaaacagttaTTTTGTTATGTCTATGCAATCTATTCTAATCACTTGTCTATTCatcaataaaaaaagtaaatcaacTTCTAAAAAGAACTTAATGCTTCAAATAAAGATTGTATCAATACATCATTACCCCAGTAGATAATAACTGTTACAATTAtataattgaattattatttaatttaatatttcaaaacacagatttatCCAATAATGTcagtcatttaatcattcattcaaactAATTTGTGATTGAATTACAATTCTTCTCTATTAACCAACTATTAACTGTGACTTTTGCCTCAGTAAACTACTTATTAATAGTCAGTAAGATGTAATTAAGGGATGGTACATAAGCGATGGTACATAAGGTACATACGTGTGTTTTTCAATTACTAATAAACAGACAAGATTCTAACAATATAAATGCAGCACTCAACACTTTTCAGAACTTCTTATAAATTGttgttttattctattaaattttgtatttaaatttgttGGAGACTGTCTTGGAAACTGTCTTCTTTTATCCCGAATCCTTTTTAGTAGAATTAAACGTGTGGATGTTCTATATACATTTAGTCCATTAAGATTATGATTAAATAAAGTCATTACATACtatataaagcatttgttaatgtttgtttttgttggcaAAATCAATATCTGGTTTGAAGCTGGCAGAAGAACTGGCAGCAAAGGAAGAAGAAGATGCCAATAAAAATCCAAAGGGTAAGGAGGACACCAAAGAAAAAGCAAAGAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-622 Predicted to enable ATP binding activity. Orthologous to several human genes including IQCA1L (IQ motif containing with AAA domain 1 like).

Ensembl:

ensembl_id ENSDART00000149209

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071043 lncRNA downstream 217264 18230965 ~ 18239449 (-) False XLOC_036348
TCONS_00071040 lncRNA downstream 227884 18225039 ~ 18228829 (-) True XLOC_036347
TCONS_00071041 lncRNA downstream 230645 18225039 ~ 18226068 (-) False XLOC_036347
TCONS_00071031 lncRNA downstream 253523 18200751 ~ 18203190 (-) False XLOC_036345
TCONS_00071023 lncRNA downstream 453029 18000382 ~ 18003684 (-) False XLOC_036342
TCONS_00071059 lncRNA upstream 62334 18523060 ~ 18524122 (-) False XLOC_036353
TCONS_00071061 lncRNA upstream 63316 18524042 ~ 18532417 (-) False XLOC_036353
TCONS_00072437 lncRNA upstream 133341 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00072023 lncRNA upstream 310881 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA upstream 310881 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00071050 mRNA downstream 57926 18369177 ~ 18398787 (-) True XLOC_036351
TCONS_00071049 mRNA downstream 88977 18356102 ~ 18367736 (-) True XLOC_036350
TCONS_00071048 mRNA downstream 89510 18354485 ~ 18367203 (-) False XLOC_036350
TCONS_00071046 mRNA downstream 140231 18259240 ~ 18316482 (-) False XLOC_036349
TCONS_00071053 mRNA upstream 45415 18506141 ~ 18516385 (-) False XLOC_036353
TCONS_00071056 mRNA upstream 54985 18515711 ~ 18532957 (-) False XLOC_036353
TCONS_00071055 mRNA upstream 54985 18515711 ~ 18532957 (-) False XLOC_036353
TCONS_00071057 mRNA upstream 56849 18517575 ~ 18537866 (-) False XLOC_036353
TCONS_00071058 mRNA upstream 57450 18518176 ~ 18535822 (-) False XLOC_036353
TCONS_00071006 other downstream 1204359 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00070990 other downstream 1791067 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 1799627 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 1843604 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 1843832 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00071054 other upstream 54314 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 62355 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 123967 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 753999 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071076 other upstream 754103 19214829 ~ 19216657 (-) True XLOC_036363

Expression Profile

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