RNA id: TCONS_00071050


Basic Information

Item Value
RNA id TCONS_00071050
length 6339
RNA type mRNA
GC content 0.47
exon number 34
gene id XLOC_036351
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18369177 ~ 18398787 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCTTAATCAAGGGACTTCTTGATGGTGAAAACAGTTTTGTTCAGGAGATGAACTTCTTTGTGGAGCATCATTTACAATACTTGGAGACAAGCTGTAAAGTTCCTCTCACCATCCTGAGTCAAAAAGAGTACATATTCAGAAATTTCAGGGACATTGCAAGTTTCCATGAATGCTGTATTCTGCCCAAGCTGGAGATGTGCTTCTCAGATGATGATGTTGCCCAGTGTTTTGTCGGTTATGCAGCGGACTTTGAAATGTATCTCCAGTTCATTACAGGCCTGCCCCAAGCTGAGGCCTGCATATCTGACAAAAACACACAGCATTTCTTTAAGCAATATGCAAACATAGAGCTGGCAGATCTGGATACCCAGGTCTTCAGTGTTGGCACATATTTGCAGAGACCCATGGAAAGAATTGAAACATACAAGACTGTGCTTAAGgaGATGATCAGGAACAAAGCAAAAAGCGGACAGAACTGTTGCCTATTAGAGGATGCCTTTGCCATGGTTTCTAGCTTGCCATGGCGTGCAGAGAACTTGCATCATCTGTCCATGATTGAAAATTACCCGGCACCTCTCAAGGGGCTCGGAGAACCCATTAGACAGggCCACTTTACAGCATGGGAGGAGATTCCTGAGGTCAAAAGCTCTCAGAGAGGACATCACCGCCATGTCTTTCTCTTCAAAGACTGCATAGTCTTCTGCAAGCCAAAAAGAGAAGTTGGCACACACACCGAGGCCTACATATTCAAGAATAAAATGAAGTTGAGTGATATTGATGTAAAGGACACAGCAGAAGGAGATGACAGATCATTTGGGCTTTGGCACGAGCATCGGGGAATGGTGAGAAAAATCATTTTGCAAGCTCGTTCCATCCTCCTTCGTCTCTCCTGGCTCAAAGACCTGAGAGACCTGCAACAGCGCAACAAACAGCCAGCTTGGTgtGCCCCATGCTTTGAGCAGCATCTTACTGACTATCCAGCAAAGCTTGGGCAAACTGTTAAACTGGTCTGCAAGGTCACTGGTACACCAAAGCCAGTAGTAAAGTGGTATAAAGATGGCCACGCTGTGCAGGATGATGAGCATCACATTACATCAGAAGGACAGTTTGGTGCTTGTTATCTTGTACTGACTGGTGTCACCGTGGCACACTCCGGTCAATACATGTGTTATGCAACCAATCCCGCAGGGAATGCAAGCACTCTGGCTAACATTATGGTTGATGTGCCTCCAAGTTTCACAACCAGACTGCAGAACGCAGTGCTTGTAAAAGGACAAGATGTGCAGTTCAAGTGTTCCACACAATCTGTTCCTTTCCCATCAATAAGGTGGTTTAAGGATGACATTCAGCTTGAGGACAGTAGGAAACACCTGATCCAGTCTGATGTTCAGACAGGAATTCTTACTCTTACTATAAAGAAAGCTGACGAGGCCGACGTGGGTCAATACCAGTGTGAGCTACTGAACGAAGTGGGCAGTGCCATGTGTAAAGCTGAACTCTGTGCTCCAGCAGCAGAAGCTGTGACAGTCAGCTCTCAGAAACAATCACAAACTGTCCCAGAGGCCCAATCAGAAGGCTGGTCCAGTTCCTTTGTGAAGAACCTGTTTCATATACTCTTTCAACCTGGATACCCTGAACCAGCCACTGCACTCACTGTGGAGGAACAGCATGACGTGGAGAGGCAGGAGTCACCAGAAGAGCCAGAGGAAACACACTTTTACTCAGACACAGAGGAGCATCAGCTCACAGAGCCTCCAGCTGTACAGGTGGCCATTGAAGACCTTACAATCCGACCTGGTCAGCCTGCAACGTTCTGTGCTATTATTACTGGCCACCCTAGACCAGAGATTCAGTGGTTCAAGGATGACGTAGAGATCTCATCCAGTGAGTACACGGTAATAGTCCAAAATGGTGCACGTTGCTCTCTCACTTTGCTGGATACTCAAACAGAGGACTGTGGCACCTACACCTGTATAGCTAGTAACAGTGCAGGACAGGTGTTTTGTCACGCACAGCTTAATGTTGACACAGGCCCAGAAGAAATTGAAGAGTCGAGAGAAGTGGAATTTGGAAAAAGACGGAAACTACATTCTGTGTATGATGTTTATGAAGAAATAGGAAGGGGCACTTTTGGAGTGGTTAAAAAAGTCACACACAAGGCGAGTGGTGAATGCTTTGCTGCCAAGTTTCTTCCACTCAGGAGCAGCACGCGAACCCGAGCGTTTCAGGAGAGAGACCTGCTGTCCCGTCTTGCTCACCGCAGACTCGCCTGCTTGCTGGACTTTTTCTCCACAAGACGCACGCTGGTCTTGGTGGTAGAATTATGTTCTTCACAAAGCTTACTagatcatttgtttttaaagggatCGGTCACAGAGAGGGAGGTCCAGTTATATATTCAGCAGGTTCTGGAGGGAATTGGATACATACATGGTATGAATATACTACATCTGGATATCAAAACAGACAACATCCTAATGGTGTCCCCCACAAGAGAAGACATCAAAATATGTGACTTTGGCTTTTGCCAGGAAGTTGACAGCTCCAGACATCAATACAGCAAATTTGGAACTCCTGAGTTTATTGCTCCAGAAATTGTCCACCAAGAGCCTGTGACAGCAGCCACTGATATCTGGTCTCTTGGTGTGGTTGCTTACTTATGCTTAACATGCCACTGTCCTTTTTTCGGGGAGAACGACCGTGCCACACTGATGAAGGTTGCCGAAGGTGTGCTGTACTGGGACACACCTGAAATCACAAGCAGAAGTGTGGAGGCACAGGACTTTCTACATAGGGTTCTACAGCCAGACCCAGAAAAGAGGCCATCTGCATCTGAGTGTTTGAGCCATGAGTGGTTCCAGGGTTACTATGAAGATGAAGAACCAGTGGAAATAAACACCAAGAATTTAAAATCTTTCATTTCAAGGAGAAAATGGCAGCGTTCTTTAACATGCCTCGGCTCAGTTCTGACTCTAAGACCAATCCCAGAGTTGTTGGAGGCTCCTCTGCGTGACGTTGCGATTACAGCTCCAAGAGACACCCAGCAGCCCAGCAGTACATCCTTAAGTAGCGGATCCTCTTCAGAGTACGATGAGGCAGATGCCTGGGACTTCTTCCAGCAGGTCAGCGAGGAGGAGGAAGATGATTTGGAGGAAGATGATGAACACACTCATGTGTCAAAGTCTCCCACTATTTTAAAACGGGATGAAGAAGAAGTGCTCATCGGTGAGGACGGAGTTCACAGCGGCCCATTGGTGATTCCTGTGACTGGATCGTCAATGGAGCCCATCGGTTTGGAGCAGCGAGACGACAGCCCTTCTGTTCTTCTCTCTGAGGGGGATGAAGGATTGACTGGTGGGCCTCCTATACCGCGTCGTATCCTCATCAAGAGTACTTTTTACTGCAGCTCCGAGCAGCTTTCACCTATGTCTGCTCGTCACATGACGCTTCGGGATAAAATCCAAGCTAAAAAGCAAGAGCGTGGCCGTAAACCTCTCCGTGCTAGCCTCTCTGGCAGGTTAAATGAACCCCTCATTGAGTATGTAGAAGATTCCCCAGACCTAGAAGCGAATCGTAACCAGAGAAGAGCATCGATGCATGCGTCTATCCTCAAGTCCAGCTCATTTGATAGTGGAGTGAGTGCTGGTCATCCAAGCATATGCACCCAGAGAAGAAGCAGGTCATTAGATGTTTACACTCAACGCTCACCAGTTTCAACGGTGCAAGGAGAGGATGAGCATGATCCTGAAATTAACAAGAAAACAGACGAAGAAGAGGAGAAAACTGAAGAAGTCCAGGTTAGAAGGAAACTCTGCCGTCGCTCTGCGTTTTTGTCAAAGAAGGGACCTGTAAATGTGAGAAAGCAGAAAGACGAGGTCCAAGAATCTGATGAAGAACATCAGGAAGATTCAAAAAGTACATGTGAGGATGATCACCAATTGCAGAATTTGGAAACTGAAGCAGCCCAATCAGATGATGAGGAGAGCGTGGATGGCTCTCACATTTCATTAGCATGCTCTCTTGACCATGGCTCAGACGCAGGATCATATGAAGCACTTCCCCACAGATCCCACCATGATGCCTTCGTGATTGCTGGATCTTCTGGCAAAACATCTGCATGCTCTTTACTTCAGGACTCTGAGGATGAGGACATGGAGAGAGTCTTGAGATCTCTTCGCCAAGACCTCCCACAAGCCCCACCAAGACGCCGCACCAACAGTTCAAGCTCTGGACTAAATGAGGTTCGCCGTAAGAGCAGTGTCCCACTGAGAAGAAGCTCCTCTGCTGTTCCTGTTCAGGCTGCAATAGCAGATCGGGAAAGCAAAGAGGTGCTTCAAAGACATGCTTCAGCCCCGGCTCTACAAGACAAACCTCCAAGTGGGAAATCTTCCAAGCCTGGATTCATGAAGATCTTCCGCAAGCATTCCTGGGCTAGCCATTCTTCTCCTCAACTAGAGGCACCGGAAAAGAAACATGCAGATGGAGCTCAACCCAAGACCCCTCTTCTAACGCTGAGGAAAAAGATGCGAGCTTCAGCCTCTAGTATTACGAAACTGTTCACCCGACAGTCCAGCAAGGAGGACGTGGAGAAGAAGAAAGTTGGTCCAATTGTGAAGAATGCCTCCCATATCATGCAAGAGCAGATGACCTTTTCAGTTCCAGCTCCCACCTCATCTGAAAGCCCTCAGAAGAAGAGCAAACTGTTCTCACTGAAAGtgccaatatttaaaaaaagcaaagAATGTCCAGTCAAACCATCCAGGCCAGATGTAATTCAGCTTGCAGGAGGAGGAGCTCTTGTCTTCTGGAAACCTGTGCCATCCAAAGAGCTTGTCACATATTGTATTCAGTATAGTGTAAATGGTGGCGAGTGGAGAGTGTTGTCAGAAAATGTCACAGATAGCTGTTTCACTGCTAAAACCCTACCAAGAGGACCAGGATATATGTTCAGAGTTTCCTATCACACTAAGACAGGGCTGGCACCTTTCAGTGATCCATCACCACCTGCCTTCATGGCAATACCTTATGAAGACTCTCACAGTCCTCTTATTGAGATGGAGTCCATTGGGTCAAAGATCACTGTACCTGGAGGTCTTGGCACCGAAAAGTCTTATAAATTCCTTTCTGAAATCAACAGaggccGTTTCAGTGTGGTGATGCAGTGCGAGGACAGCCGCAGCTCTCAGATGCTGGCAGCTAAAATGACTCCCTACAAACCAGAGCAGAGGCAGCTGGTTTTGAGGGAATATCAAGTGCTCCGTCGACTCAGCCACCCTCGAATCGTCCAGCTGCATTCGGCCATCCTCACCTCCACCTGCCTGCTGCTTATAGAGGAGCTGTGCTCAGGGCGAGAGCTGCTTTATAACCTCGCAGAAAGGAATCTTTATTCAGAAGCACACGTGACTGACCTGCTGGAGCAGATTCTGAGCGCTGTGGATTACCTGCACAGTCGACGCATTGTACACCTGGACCTGAAGTCAGATAACATGCTTGTGACGGGCAAAAATTTAGTGAAGATTGTGGATTTAGGCTCCGCTCAGCCGTTTAATCCAGGACAGGCGCTGAACATTGAACATATCAGGGAAATGACAGATAATAAAGGTTATATTGTCCTTCCTAAAGCTCCTGAAATCTTAGAAGGACAAGGAGTTGGCCCTGAAACCGATATCTGGGCTATTGGTGTTTTGGCTTTTATAATGTTGAGTGCAGACAGTCCTTTCCATGCAGATTTAAATTGGGAGAGGGATCGAAACATCAAAAAAGGCAAGATCCAGTTTAGTCGCTGTTACCCAGGTCTCTCAGAAGGAGCCATCAACTTCATGAAGAACACCCTGAGCAACAAAGCCTGGGCAAGACCAACAGCAGCAGAGTGCCTCCAGAACCCCTGGATTGAAGGAGAGCATCCGTCCTCCAAACACGCGGACTCTGTGGTGTGCTTTTCAGCAGACAAGCTGCAGGCCTATCTCAGGGAACGAGAGGCCAAGAGAGACCACGTCCGCACAAAAACTCAACTGCCCCTCTCATGATTCAAGAGTGGACAAAAGTCATATGTCAAACTGTGAAATGAGTGAGGTTTATTTTTGTGCTGCACTTCCATGCGGGAATATATGATGCTTAACATTTTTAGCAGTAATGATATTTGGTTGTATTTCTTTAGATGTTTGATTACAGTTTATTTCAAGGTTTGCTTGATAGTTAGTATTTATTCCTATTGAGTAGTGTTAATTTGCTACAAATACTTACTACAGTATATGCTTAGGCTTAGAATGCTGGTTAGGTTTATAGTTAGtgcaattataattaatatagtaAGTACATGGAATATGAAATATGTGGG

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0042383 sarcolemma cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0014704 intercalated disc cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040812-4 Predicted to enable protein kinase activity. Predicted to act upstream of or within muscle organ development. Located in Z disc. Is expressed in central nervous system; heart; skeletal muscle; and skeletal muscle cell. Orthologous to human OBSCN (obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF).

Ensembl:

ensembl_id ENSDART00000063577

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071043 lncRNA downstream 129728 18230965 ~ 18239449 (-) False XLOC_036348
TCONS_00071040 lncRNA downstream 140348 18225039 ~ 18228829 (-) True XLOC_036347
TCONS_00071041 lncRNA downstream 143109 18225039 ~ 18226068 (-) False XLOC_036347
TCONS_00071031 lncRNA downstream 165987 18200751 ~ 18203190 (-) False XLOC_036345
TCONS_00071023 lncRNA downstream 365493 18000382 ~ 18003684 (-) False XLOC_036342
TCONS_00071059 lncRNA upstream 124273 18523060 ~ 18524122 (-) False XLOC_036353
TCONS_00071061 lncRNA upstream 125255 18524042 ~ 18532417 (-) False XLOC_036353
TCONS_00072437 lncRNA upstream 195280 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00072023 lncRNA upstream 372820 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA upstream 372820 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00071049 mRNA downstream 1441 18356102 ~ 18367736 (-) True XLOC_036350
TCONS_00071048 mRNA downstream 1974 18354485 ~ 18367203 (-) False XLOC_036350
TCONS_00071046 mRNA downstream 52695 18259240 ~ 18316482 (-) False XLOC_036349
TCONS_00071047 mRNA downstream 53142 18267195 ~ 18316035 (-) True XLOC_036349
TCONS_00071045 mRNA downstream 107028 18242505 ~ 18262149 (-) False XLOC_036349
TCONS_00071051 mRNA upstream 51265 18450052 ~ 18460791 (-) False XLOC_036352
TCONS_00071052 mRNA upstream 57926 18456713 ~ 18460726 (-) True XLOC_036352
TCONS_00071053 mRNA upstream 107354 18506141 ~ 18516385 (-) False XLOC_036353
TCONS_00071056 mRNA upstream 116924 18515711 ~ 18532957 (-) False XLOC_036353
TCONS_00071055 mRNA upstream 116924 18515711 ~ 18532957 (-) False XLOC_036353
TCONS_00071006 other downstream 1116823 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00070990 other downstream 1703531 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 1712091 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 1756068 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 1756296 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00071054 other upstream 116253 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 124294 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 185906 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 815938 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071076 other upstream 816042 19214829 ~ 19216657 (-) True XLOC_036363

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_03637767_03674123.mRNA True 15145 mRNA 0.44 55 CI01000010 3637767 ~ 3674167 (+)