RNA id: XM_039786921.1


Basic Information

Item Value
RNA id XM_039786921.1
length 4037
RNA type mRNA
GC content 0.45
exon number 14
gene id smoc1
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 9935736 ~ 10007687 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATACAACAAGCGCGACTCGACCTGTGGAAGCCGCGATGAACAGCTGATCCTCCCGCAGTGGATAACACCGATCACCATGGTCACCGCCGAGTCCTGACTTCTCATATCCCACGCGCGGCACTATATGATTAGTTATTGGGGAAGTAGACAATAAGGGGAAGTAGCTAAAAGGAAAGTAGAATTGGAGAGAGTGAAggagtgctttttttttttttttggagagggGTTCTTTCTTTTGGACCTGTTGATCATCAGTGTGACAGACGGACACCCAGAGACTACCTGCCGCCTCCCGCTCTGCGCTCACCGACCATCAATGATGTTATTGCCGAGTTTGCTTCTTTTCACCTCTTGTCACTTTTTGGCGCCTGTGTTCCTCTGCTACCTGCCGCAAGTCTCCGCACAGAAGCCGGGTTCACGGTGGCTGATCGGAGACAGAGACAGTCACTGTGGGGTCATCTGCCCGCGGACGCAGGGGAAGCCGGTGTGCGGCTCGGACGGGCGGAGCTATGAGACCGGCTGTGAACTGCAGAGGGCGCGCTGCAAAGATAAAACCCTGGCACTGGCACACCGCGGCCGGTGTCGAGGTAAAAACTGGGTGAAGATCGATCAGTTGCCGGTGGCTCCAGCACCAACATCTGAGGCGAGAGACCTGGAGCTCAAAGATGCAGGGCAGTCCAAGTGTCGCGTTGAGAGGAACCAAGCTCTGGAGCAAGGCAGGAGACCTCAGGACACCATGTTCATCCCAGAATGCAACGAGGATGGAACATTTGCGCAGGTCCAGTGCCATACTTTGACAGGTTACTGCTGGTGTGTCACCAGTGACGGCAAGCCAGTGAGTGGCTCCTCTGTGCACAACAGGACCCCGGTGTGTTCAGgGTCAGTAACCGATAGACCACCCGGGCCACCGAACTCTGGTAGAAAAGTCTCTTTCCGTTTCTTTCTCACCCTCAATCCAGACGATGGCTCCAAGCCCACGCCCACCATGGAGACTCACGTCCCCCCTGAGGGTGATGAGATAACTGCTCCAACGCTGTGGATTAAACAGCTGGTTTATAAGGAGAATAAGCAGAACAGCTCCGCTTCCAGGAAGCAAGAGAAAGTTCCCTCTTGTGACCAGGAGCGACAGAGCGCACTGGACGAGGCTCGGCAGAATCCTCGCGAGGCCATTTTCATCCCTGACTGTGGGCCTGGAGGCCTTTACAAACCAGTCCAGTGCCACCAGTCCACAGGCTACTGCTGGTGTGTTCTGGTGGACACGGGACGACCCATTCCTGGAACATCCACCAGGTACCAGACGCCGGAGTGTGACGGCGCCGCACGATCTCGCATCTCAGATACTGAAGATCCTTTCCAAGGCAGAGACCTgacagGCTGCCCAGAGGGGAAGAAAGTGGAATTCATTACAAGCTTGTTAGATGCCCTCACCACAGACATGGTGCAAGCCATAAACTCGCCAGCCCCCTCTGGTGGTGGGAGGTTTGTTGAGCCTGATCCCAGTCACACTTTAGAGGAGAGGGTGGTGCACTGGTACTTCGCCCAGCTGGATAACAACGGCAGCCACGACATCAACAAGAAGGAACTCAAGCCGTTTAAGAGGTACCTGAAGAAGAAAGCCAAACCCAAGAAATGTGCCCGCAAGTTCCCCGACTACTGTGACCTGAATAAGGACAGGGCCATTTCCCTGCAGGAGCTGAAAGGCTGCCTGGGAGTCAGCAAGGAGGGTAGTTCAACGACAATTGGCAACCAAGGGACAAGGCAAGGGACAAAATTGTTCATAGGTCGTCTGGTGTGAGAAGAGAAGGATCCAGAAGCTGAGACGAGAGCAGAGGGCACAGAGGGAAGGCATCTGTACGCTTGCTGacaggaaagagaaagatggagcAGAAAAATTGAGAAGTTCCGGAGTTTCAAAAAAGTGaacagaaaaacaagaaaacgAAGCGGCGCCAAAATATTTGCACTTTCTCCTCCCtatgtttgacattttatctgtttgtatgtgttatttttttgtttttttttcttctgctcttGAAGTGACTGAAAAGGTCTAGGTAAGAATGAGaatatatttgtaaaaaaaaaaagatgacaggCTCACCACTGGAAGAGGTTACCACATTTCCCCTTGTGTTTTAGTCTGCTGTTGTGATTCGTTCTGTCCTCACATAACAGGAACAGGCAGTAACACACATTTTGTGGCTATTAAATTAAACTTAGATGTCCCCTGTTACATATAGTAGCACACAGGCCAGTGGCATCTCACTAAAGAGGATCTTACAGTGAGTCACATTCAGCTCAAATGTTGCTTGATACTCAAAAAAGGAGGAGCTATGGCAATGTAGACCAATTTAAACGAATGTGTAATGTATGTGGGCATGCAATTTAAAAGTGAAACGGCATGTATTAGAATTGAACTGTGACCATGAAGTCTAATTTATCAGCACAGAATTAGCTGTATGAATCCCTTGCACTGTACTGAACTTTCTAGATACATTAACATTTTGGCTTAAGAATCAGATCCTTCCGAAATGTCTCAGATGTGTTACGTCTGTTTTTTGTTCAGTACGTACCAGTGTTGGGGAAAGCTTGCTGAAAGTAATTACTTGCTTAACACACAGTTGCCTAAAAGGTGTACTTTTTGTGCTACCAAAACCAATGCAAGACCATTGTGTTGTATGTAGTTTTCAGCATGTTGTCTGCACAAGATGCCTTGaggttcatttttcatttttttttttttttttttaaataacgttTGTGCGGACAAAAAACGAaattagtaaaaaaacaaacatttaaaaaagaaaatagaaacagATTGTGAGAATTCTGCAAAAAATTTGTAGCAGCTGTCCATAATAACAATGGTGATATGAGTAATTTAAAGTCatgcatccccccccccccaacactggtacagtacatacacagtCTTAGCCGTATACTAACTCAGCTTAACACTGTAGCAAACAGCTGGTAAAACATTTACACATGCATGTGGCAGTATGGAcatattaaagctgcattaatgaATTGTTGAGACACACAACTCTGAACTAGTATTGCCTCATGAAGTTGTTATGGCTAACACAGCAAAATAATAATTCCAAATCCAATGTTCACTCTCCTTTCAGCTccgttttggtctccaccacctcctgaggaaaatatctggTTCTTTAGCTGATAAACACTCCACTGTGTtcactagctagttgctaacgttatctgtctggtgtttggtgctgagcaggtagaaTATAGTCCGATTAGCATGGCTTATTTGTTGCAGACGGCTTGATGAGAGTGCTGGAACCAAACTATTTAGTAAATGTGCCATAAAAACGAGTTCCAAGAAACTAAAACAAAGTCGGCTGAGCTGTGTGATAATGCTCTGAGGGTTCGTCTGTACGAGAGACCCCTTTCACAATCCATTAGATTTAATgttgatatataaaaaaaactgattaatgcagctttaagtccAAACCACAATGAAGGCCATTGGTTTACACATATCTTGTGTCCCTCTGTTGTTCTACGTGTAATTATATGTCAAGGTACAAGTCAGTGTGGCTGATTTCATTACTCTACTTTAAGTGAATGTTAGTATTCATTTTCTACACAGTCAAACCTGAAAAACAGCTAAAGAGTATCTCCAGTGTGTTAATGGTAAATTCCGcatgtttatttttctcaaagtgTTGGGTTCATCGGGCTCAACTGGCTACCTTTACAAATTGCAATAACAACAAATCTCACGAAGACCCCCTGGTggggattttatttttccaaaacaGATTACAGTCCACAGAATGacttaaatatttttattagtacCAGGAAAAAAAAGGTGGCACAGATGACTAAACCCAACCAGTAAATGGAGTAAGATGTTTACATGACTCAGTATCCCGGTAATATCAGCTAATTTCAGCTGTCATATTTACGTTTATCCCAGTTATTGTAAACGAGATGTGGCATTTACAAATGCCTGttcctaaaataaataattgagtCTCCCCACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272747 lncRNA upstream 28870 9906497 ~ 9906866 (+) True G201314
TU272741 lncRNA upstream 79009 9831637 ~ 9856727 (+) True G201309
TU272658 lncRNA upstream 338733 9591184 ~ 9597003 (+) False psen1
TU272656 lncRNA upstream 344952 9586960 ~ 9590784 (+) True G201246
TU272867 lncRNA downstream 38684 10043426 ~ 10043913 (+) False LOC120549492
TU272870 lncRNA downstream 45798 10050540 ~ 10050743 (+) False LOC120548905
XR_005637437.1 lncRNA downstream 75983 10080725 ~ 10082943 (+) True LOC120549808
TU272880 lncRNA downstream 89649 10094391 ~ 10094751 (+) True G201396
TU272894 lncRNA downstream 147159 10151901 ~ 10152759 (+) True G201409
XM_039786364.1 mRNA upstream 282337 9615560 ~ 9653399 (+) True paplna
XM_039786365.1 mRNA upstream 282337 9615560 ~ 9653399 (+) False paplna
XM_039786366.1 mRNA upstream 282337 9615560 ~ 9653399 (+) False paplna
XM_039785407.1 mRNA upstream 331111 9591170 ~ 9604625 (+) True psen1
XM_039786008.1 mRNA upstream 373168 9553606 ~ 9562568 (+) False exd2
XM_039786924.1 mRNA downstream 8982 10013724 ~ 10024172 (+) True LOC120549788
XM_039786872.1 mRNA downstream 162635 10167377 ~ 10175985 (+) True arg2
XM_039786874.1 mRNA downstream 177367 10182109 ~ 10193114 (+) False rdh12
XM_039786873.1 mRNA downstream 177381 10182123 ~ 10193114 (+) True rdh12
XM_039785096.1 mRNA downstream 230276 10235018 ~ 10241158 (+) True si:ch211-10a23.2
TU272715 other upstream 118111 9708864 ~ 9817625 (+) True G201287
TU272417 other upstream 714434 9220641 ~ 9221302 (+) True G201057
XR_005637554.1 other upstream 3035392 6900139 ~ 6900344 (+) True LOC120550068
XR_005637532.1 other upstream 3041314 6894216 ~ 6894422 (+) True LOC120550044
XR_005637539.1 other upstream 3046819 6888711 ~ 6888917 (+) True LOC120550052
unassigned_transcript_1139 other downstream 25254 10029996 ~ 10034827 (+) True LOC120549541
unassigned_transcript_1140 other downstream 25818 10030560 ~ 10031384 (+) True LOC120549542
unassigned_transcript_1141 other downstream 35401 10040143 ~ 10040762 (+) True LOC120548903
unassigned_transcript_1142 other downstream 36469 10041211 ~ 10041858 (+) True LOC120548904
unassigned_transcript_1143 other downstream 37283 10042025 ~ 10044094 (+) True LOC120549492

Expression Profile