RNA id: TU272884


Basic Information

Item Value
RNA id TU272884
length 288
RNA type TUCP
GC content 0.59
exon number 3
gene id G201399
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10112020 ~ 10117606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaaatgacatgcagcaaagcgGGCCCGGGCCCGGAGTTGAACCCGAGCCCGCTGCTTTGAGCAGTAAATCTCTGCACATGGGctcccgctctaccaactgcgCCATCCGGGTACCGATGCCGTCGTGTTACCTTGAGCTCGGTCTCGGTCTGCTGCTTGTCCACGCTGCAGCTGTTATCCATCAGCCAGAGGACGAccgagaagaggaggagagtgaaGGCAGAGCTCATGGAAACATAACATTATGGTCCTGCAGCAGGTTCACATCTCCGGGATCCCCGCCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272880 lncRNA upstream 17269 10094391 ~ 10094751 (+) True G201396
XR_005637437.1 lncRNA upstream 29077 10080725 ~ 10082943 (+) True LOC120549808
TU272870 lncRNA upstream 61277 10050540 ~ 10050743 (+) False LOC120548905
TU272867 lncRNA upstream 68107 10043426 ~ 10043913 (+) False LOC120549492
TU272747 lncRNA upstream 205154 9906497 ~ 9906866 (+) True G201314
TU272894 lncRNA downstream 34295 10151901 ~ 10152759 (+) True G201409
TU272994 lncRNA downstream 155466 10273072 ~ 10295497 (+) True G201480
TU273019 lncRNA downstream 213224 10330830 ~ 10368130 (+) True G201505
TU272984 lncRNA downstream 227933 10345539 ~ 10351126 (+) False ndufaf1
TU272988 lncRNA downstream 261275 10378881 ~ 10382515 (+) False G201478
XM_039786924.1 mRNA upstream 87848 10013724 ~ 10024172 (+) True LOC120549788
XM_039786921.1 mRNA upstream 107278 9935736 ~ 10004742 (+) False smoc1
XM_039786872.1 mRNA downstream 49771 10167377 ~ 10175985 (+) True arg2
XM_039786874.1 mRNA downstream 64503 10182109 ~ 10193114 (+) False rdh12
XM_039786873.1 mRNA downstream 64517 10182123 ~ 10193114 (+) True rdh12
XM_039785096.1 mRNA downstream 117412 10235018 ~ 10241158 (+) True si:ch211-10a23.2
XM_039786500.1 mRNA downstream 227413 10345019 ~ 10350713 (+) True ndufaf1
unassigned_transcript_1147 other upstream 19430 10091682 ~ 10092590 (+) True LOC120549807
TU272875 other upstream 30018 10081350 ~ 10082002 (+) False LOC120549808
unassigned_transcript_1146 other upstream 31364 10079725 ~ 10080656 (+) True LOC120548906
unassigned_transcript_1145 other upstream 61077 10050248 ~ 10050943 (+) True LOC120548905
unassigned_transcript_1144 other upstream 61874 10049511 ~ 10050146 (+) True LOC120549595
XR_005637396.1 other downstream 227413 10345019 ~ 10350713 (+) False ndufaf1
XR_005637354.1 other downstream 1347805 11465411 ~ 11485526 (+) False smc6
XR_005637295.1 other downstream 1407136 11524742 ~ 11560413 (+) False si:ch73-242m19.1
TU273733 other downstream 1779291 11896897 ~ 11897483 (+) False tulp4b
XR_005637440.1 other downstream 1788235 11905841 ~ 11913857 (+) True slc18b1

Expression Profile