Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00072047 |
| length | 1544 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 4 |
| gene id | XLOC_036494 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 27183274 ~ 27201164 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | biological_process |
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0080090 | regulation of primary metabolic process | biological_process |
| GO:0051171 | regulation of nitrogen compound metabolic process | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0009889 | regulation of biosynthetic process | biological_process |
| GO:0031326 | regulation of cellular biosynthetic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0010556 | regulation of macromolecule biosynthetic process | biological_process |
| GO:2000112 | regulation of cellular macromolecule biosynthetic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0140110 | transcription regulator activity | molecular_function |
| GO:0001067 | regulatory region nucleic acid binding | molecular_function |
| GO:1990837 | sequence-specific double-stranded DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00071303 | lncRNA | downstream | 204253 | 26977429 ~ 26979079 (-) | True | XLOC_036492 |
| TCONS_00072470 | lncRNA | downstream | 212206 | 26967436 ~ 26971126 (-) | True | XLOC_036491 |
| TCONS_00071299 | lncRNA | downstream | 460004 | 26722642 ~ 26723328 (-) | True | XLOC_036488 |
| TCONS_00072469 | lncRNA | downstream | 482997 | 26685829 ~ 26700335 (-) | True | XLOC_036486 |
| TCONS_00071292 | lncRNA | downstream | 796696 | 26386032 ~ 26386636 (-) | True | XLOC_036484 |
| TCONS_00071314 | lncRNA | upstream | 280880 | 27482044 ~ 27515172 (-) | True | XLOC_036496 |
| TCONS_00072062 | lncRNA | upstream | 350060 | 27551224 ~ 27552347 (-) | False | XLOC_036497 |
| TCONS_00072474 | lncRNA | upstream | 350392 | 27551556 ~ 27553141 (-) | False | XLOC_036497 |
| TCONS_00072063 | lncRNA | upstream | 350392 | 27551556 ~ 27574083 (-) | False | XLOC_036497 |
| TCONS_00072064 | lncRNA | upstream | 371383 | 27572547 ~ 27574043 (-) | True | XLOC_036497 |
| TCONS_00071301 | mRNA | downstream | 221553 | 26923613 ~ 26961779 (-) | False | XLOC_036490 |
| TCONS_00071302 | mRNA | downstream | 246107 | 26924217 ~ 26937225 (-) | True | XLOC_036490 |
| TCONS_00071300 | mRNA | downstream | 264816 | 26902358 ~ 26918516 (-) | True | XLOC_036489 |
| TCONS_00071298 | mRNA | downstream | 390420 | 26714532 ~ 26792912 (-) | False | XLOC_036488 |
| TCONS_00071297 | mRNA | downstream | 480097 | 26702679 ~ 26703235 (-) | True | XLOC_036487 |
| TCONS_00071313 | mRNA | upstream | 160523 | 27361687 ~ 27515540 (-) | False | XLOC_036496 |
| TCONS_00071316 | mRNA | upstream | 429528 | 27630692 ~ 27656765 (-) | True | XLOC_036499 |
| TCONS_00071317 | mRNA | upstream | 458080 | 27659244 ~ 27687095 (-) | True | XLOC_036500 |
| TCONS_00071319 | mRNA | upstream | 621848 | 27823012 ~ 27858458 (-) | False | XLOC_036502 |
| TCONS_00071321 | mRNA | upstream | 622137 | 27823301 ~ 27849770 (-) | False | XLOC_036502 |
| TCONS_00071296 | other | downstream | 475973 | 26702217 ~ 26707359 (-) | False | XLOC_036487 |
| TCONS_00071284 | other | downstream | 1337144 | 25818622 ~ 25846188 (-) | False | XLOC_036477 |
| TCONS_00071280 | other | downstream | 1422294 | 25756682 ~ 25761038 (-) | False | XLOC_036475 |
| TCONS_00071278 | other | downstream | 1428034 | 25752125 ~ 25755298 (-) | False | XLOC_036475 |
| TCONS_00071268 | other | downstream | 1517571 | 25650229 ~ 25665761 (-) | False | XLOC_036471 |
| TCONS_00071308 | other | upstream | 2162 | 27203326 ~ 27206090 (-) | False | XLOC_036495 |
| TCONS_00071309 | other | upstream | 2167 | 27203331 ~ 27206934 (-) | False | XLOC_036495 |
| TCONS_00071310 | other | upstream | 2209 | 27203373 ~ 27205479 (-) | False | XLOC_036495 |
| TCONS_00071311 | other | upstream | 4082 | 27205246 ~ 27206559 (-) | False | XLOC_036495 |
| TCONS_00071312 | other | upstream | 4128 | 27205292 ~ 27206922 (-) | True | XLOC_036495 |
