RNA id: XM_039785523.1


Basic Information

Item Value
RNA id XM_039785523.1
length 4994
RNA type mRNA
GC content 0.53
exon number 20
gene id larp1b
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 7098440 ~ 7139983 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACAGCAGCTGGCTACACGAGCTCTTAGCTGGTAGCGTGGAGAGTTGAAACCAGAGACACAGCGAGGAGGTCGCTGTAGTAGTTTGATTTTTTCTTCTAAAGTCACAGAAAACTCGCAGGGGGACATACTCAGCGTGTGTAGTTTACATGGTGACTGCCTACACACTCCGAGGTAACTACTCGTGGATATGAAACACTCGATCGGATCGGAAGGCAACATTTAGCTCGCTGACTTCTGCATGGTCGCTGGCTAGCTAACGGTTAGCTTCAGGAGCTACTTGGCTAGCTGGCTATCGAGGTCCAGCCCAAAAGTTGTTTACCCCAAGTTGTGGATGTGGTCTCCCCCCCTGAGCTTTTCACGAATTTTCCCTGGGATAAGAGAGTAAGGACCAAATAGTCACACTGGATTTAAAACTGTGCGCTGTTAGGAAACTAGCAGGATGTCCACAGAGGTTGAGTGTAGTCAGGTTGGCTCGGGTTTGACAGCGACCAGCTCCGGTGGAGCGGAGGAGAAGAACCAAAACAAGTCCGAGGGGGCTCAAGAACAAGAAGAAAAGCCGCAGAAAGGCTCGGGAAAGCAGCTAGCAGACGACCACAGCTGCTCCGAGGCAGCGAAGAGCCCGACGGACACGCACAAGAAATGCAAAGAAAACGATAAAGAAAATGACCAAAGCAGCAATGCTGACTCGGCTGTCGAGGCGGTGAAGAGGAAAGTTGTTGAAGCTCCTCCGCCGAAAGTCAACCCCTGGACCAAGAGGACCACGGGCAGGGTGCCGAGCAACAATATCAACTCCAGCTCCCAAGAGAAAGATCAACAAAACGCTCTGAAAGTCGTCCGTGCCAGCAAGCCCAGAACGAGAAAATCCAGCAAGTCAAGTGACTTCAGCGATATCACTAACTGGCCCACACCTGGTGAACTGGCCAAAGAGCAGCAACAAAATGTCCTCAACAACAACGGGAAGAAGCCTCCCTCCTCacgcagagagaaggagaagaagagggaTGGCATGGAGAGAAAGTCTGAGAACAGCCATGACGGCGGGGAGAGCAAAGAGAACCAGGAGGCCCAGCTGGACCTGCTTGGAGAGGTGCCCAAAGAACCAGAATCCAAGGCGGGAGCGGACACCAAGAGCGCCGGCCTGAAGAAGAGGGGAGGTGAGGGTAACAAACGTAAGTGGGTTTCTCTGCCGCTGGAGGAAGGGTCCCGGGACGACGGCGACAAGACGCCCGGTGGGGGTCCGGCACGCTCGGACACAGAGCCCACCAGCGACTCAGCCGACCCCACGTCGCCCAATCACACGCTCCATAATAACAGGGCGCATGATAGCAGCAGGAGTTGGAGAAGAGAGCCGCGGGACTTTGGGGACGAGCCCGCCAGCGTCCGAAGTGACAACGCGAGCGTTCACGGAGAAATCCGAGGCCGAGGGAAAGGTCGAGGGCGCGGCAGAGGTCGCGGACGGGGCCGCTATGAATACTCTCAGAGCTTCCGGGACTCTCAGTCGTCTGACGGCTCGGTTCGGGCCCCCTCCGAGTTCGGCAGCAACATGGTTTACTACTACGACGACGGCAGCAAGGTCCAGATGTACACAGTGGATGAGAAGCTTCTTAAAGAGTACATCAAACGCCAAATTGAATACTACTTCAGCCTCCACAACCTGGAGCGAGACTTCTTCCTGAGGAGAAAGATGGACACGCAGGGCTTCCTCCCCATCTCCCTCATCGCCAGCTTCCACAGAGTGCAGGCCCTCACCATGGATGTCAGCCTCATCATGGAGGCCCTGAAGAGCAGCAAAGAGGTGGAGCTGGTGGACGACAAAGTTCGCTGTAAAATCGAGCCGGAGCGCTGGCCCATCCCAGCCCCCAGCGTCGTGGGTTCCCCTCGGACCGACTTCTCCCAGCTCATCAACTGTCCCGAGTTCGTTCCTCGACAGACCCTCAACTCCACAAACTCCGCTTCATCGCCTGTGAAGAAGACTCCTGAGTCTGCGGAGCCTCAGCACTCCGCTGAGCCCAGTTCCTCCAGCCAGGAGTCCCTCCCAGCCGAAGACGCCCCCAAGCCTGACCCCGACGCCTGGATCCAGGTGGAGAAACGCCACCGTCAGCCCTCCGGAAAGCATGTcactgatgatgtgtgtgttgtcgGCTCTACTCCTCCCACAGCGCTCCAAACCGGCCTCCTTCCCTCTGCAGAGCGCAGCGAGGCTCCGCCGCGCAGCCACCAGGCCCGTCCGCACGCCCTGCCGGACCAGGAGGAGCTGGACTTCCTGTTCGACGAGGAAATGGAGCAGATGGCGCCCAGGAAGAACCGCTTCACCGACTGGTCGGACGAGGACGACTCGGACGACGAGCTGGACGACCAGGACGTCAACAAGATCCTCATTGTCACCCAGACCCCCCCGTATATCCGCAAGCACCCCGGCGGCGACCGGACAGGCAACCACGAGTCCCGTGCCAAGCTCACTACCGACCTGGCCAAAGCCATCAACGACGGGCTCTTCTACTACGAACAGGACCTGTGGAAGGGAGACGAACCCTTTGAGTGTACCAAGCAGGAAGTGGAGGGCTTCAAGAAGATCAACGTCATCAGTAAAGACGAGTTTGACACGCTCACCCCCAAAGTGCCCGTTGACCCCAACCAGGAAGTCCCGCCTCCTCTCATGCCAGGTGTGGTGTCCGTCGACAGCGGCGCCGAGTTGGCCCACTCTCTGCCCACGTCGGTCCCGGAGTCGCCCGTCGCTCACCAACCCCGAACGCCCAGGACGCCTCGCACCCCCGGGCGCCAGGACCCCAACAAGACGCCCCGCTTCTACCCCGTCATGAAGGAGAGCGGCACCATCGACAGACAGACGCCGAGGAAGAAGAAGACCCGCCACAGTTCGAACCCCCCTCAGGAAGCCCACATCGGCTGGGTGATGGACTCCCGTGAACACCGGCCGCGCTCTGCGTCCATCAGCAGCTCCAACGCCTCTCCATCAGAAGGCGCTCCGCTGGCGGGGAGCTACGGCTGCACCCCCCAGTCCCTGCCGAAATTCTGGCATCCATCCCACGAGCTGCTGAGGGACAACGGCTTCACCCAGCAGGGATACCACAAGTACCTCCGGCGGTGCATTAACGAGAGGAAACGGTTGGGGATCGGCCAGTCTCAGGAGATGAACACTCTGTTCAGGTTCTGGTCCTTCTTCCTGAGGGACAACTTCAACAGGAAGATGTACGAGGAGTTTAAACTACGTGCGCTGGAGGACGCCAAAGAGAACTACAGGTACGGACTGGAGTGTCTCTTCAGATACTACAGCTACGGTTTGGAGAAGAGATTCAGGTTGGATCTGTTCAAGGACTTTCAAGAAGAGACCCTCAGGGACTTTGAGAGAGGTCAGCTGTATGGACTGGAGAAGTTCTGGGCCTTCCTAAAATACTCTAAGATAAAGAACCAGCCCATCGACCCAAAGCTGAAGGAACACCTCTCCCAGTTCAAGAACCTGGAGGACTTCAGGGTGGTGCCCCCgatgggagaggagggaggcagGAGGAGACGTCTCTCGTCCTCGGCAGGGGATGAGGGGAGGCGTCGGCGACATCCTTCCAACACTACCTCAAAGCCCACGCAGGCCTCCAAACCCTCCGCCTCCACCGCTGCCGCCGCACACAACACAGCCAAAGATAACGGCCAGAAAACAGCCACCGCTCAGGGGAAGAAGCCCGGGTCTGGAGCCGGGAAGAAGGAAAGCGCTGCGCCAAATAAATGAAGCTCGCTCCTGTAGGCGCGAGTCTGgatagaagagagagagagagagagagcgagagagcgagagagcgaagCGGCGGCGGCTGCAGCTCTGAGATCCGCGTTGGTTCTTTTCAACGGCAAACCGTTTTGGGTATGAGGGATTGAGCGTGGTTGACTTAATTTGATTGTTTTTATCTgtgcatttcattttaaagcaagcaagcaagcataGGCAGTGACAGCTCATAacgtttacaaaaaaaaaagcaaaaaaatgcaTTCCCTGCATTTTGCCTTTTTATTCTCTCCGATGCCAAAACTGATCCCAACCTGTAAAGAGCTCTGGCCTGTATGGAGCTCTCAGCCTGTTGAACTGTGATTCTAGTTTGCCAAGATAAGAGATAAAGCAGATAGTCTTGTGTGCCTTCATCTAATTCACCAGGAAGGGGAAGGGCGACCAGAGACAAAATAGTCCAAATTTCAGTCCTCCcaattgatcttttttttttttttttttatgtttttaaaactgACACCACTTGCaggtttttttcttattttaaattttttttcttacaatgacAATCAGGTTGACAAGCTGCAGTCATAAATTTGTGAAGGACCGACCCCGAGGCTGCTCCTCACTAACAGGTGTTCCCTGATGTTTTGACCCATGACGCCATCACAGCTAAACATATATATCATGTTGGTTTTTTAAATCAAACCCGCAGGAATAATGACGCATTCATGCATTTATGTGGGACACTTGACTTTTAAGTTCCGTTTTACAGTCAGAGGTAGtataatttattgttttatttttgtttttgtttttacttgattTGATGAAATAGTCTTAGGTAATCATCGCAGTCTCTAATGGCTTTTTTTGCTATTGAATATTATAAGAAAGAGAAATGTTTCTGCTGGAATTTTGGGTGTGAGCTAGCATCATCaaactacagtatattttaGCTTGAAGTTGACTTCATATTACGTTTGAGGCTTTGTGCTCTAGAGCACTTAAATAATTAACTTTCCTTTACTTCATCGATGGACTTGGAGAGGTTTTTAgagttgagtttaaaaaaaaaaaatgtaaatactatAAAAAATCATTTGCTATTCAATTATTCTTTTTGATTTTAAGAATTGATTTGTTTTATCGGTAGTGTGGTTTTGAGTGTGTTTTAGGATAAAGCAATGCATGCTAATGCCACAGTCTTGAAttgtaaaatgcaaaaaaatataaaataacagtTGATTGTA

Function

GO: NA

KEGG:

id description
K18757 LARP1; la-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271830 lncRNA upstream 60696 7036433 ~ 7037744 (+) True G200613
TU271828 lncRNA upstream 66511 7031721 ~ 7031929 (+) True G200611
TU271827 lncRNA upstream 70944 7027225 ~ 7027496 (+) True G200610
XR_005637400.1 lncRNA upstream 80783 6988005 ~ 7017657 (+) True LOC120549536
TU271837 lncRNA downstream 13361 7153344 ~ 7171856 (+) True G200615
TU271858 lncRNA downstream 52588 7192571 ~ 7194634 (+) True G200618
TU271975 lncRNA downstream 121414 7261397 ~ 7261785 (+) True G200704
TU271989 lncRNA downstream 198363 7338346 ~ 7344002 (+) True G200717
TU271990 lncRNA downstream 198363 7338346 ~ 7344002 (+) False G200717
XM_039786539.1 mRNA upstream 5789 7072100 ~ 7092651 (+) False LOC120549540
XM_039786541.1 mRNA upstream 5789 7073001 ~ 7092651 (+) True LOC120549540
XM_039786542.1 mRNA upstream 5789 7073001 ~ 7092651 (+) False LOC120549540
XM_039786543.1 mRNA upstream 5789 7073001 ~ 7092651 (+) False LOC120549540
XM_039786544.1 mRNA upstream 5789 7073349 ~ 7092651 (+) False LOC120549540
XM_039785532.1 mRNA downstream 1299 7141282 ~ 7153826 (+) True pgrmc2
XM_039786660.1 mRNA downstream 19505 7159488 ~ 7171856 (+) False asmt2
XM_039786659.1 mRNA downstream 19506 7159489 ~ 7171856 (+) True asmt2
XM_039786661.1 mRNA downstream 19704 7159687 ~ 7171856 (+) False asmt2
XM_039786662.1 mRNA downstream 19706 7159689 ~ 7171856 (+) False asmt2
XR_005637554.1 other upstream 198096 6900139 ~ 6900344 (+) True LOC120550068
XR_005637532.1 other upstream 204018 6894216 ~ 6894422 (+) True LOC120550044
XR_005637539.1 other upstream 209523 6888711 ~ 6888917 (+) True LOC120550052
XR_005637535.1 other upstream 210884 6887350 ~ 6887556 (+) True LOC120550047
XR_005637540.1 other upstream 213679 6884554 ~ 6884761 (+) True LOC120550053
TU272417 other downstream 2080658 9220641 ~ 9221302 (+) True G201057
TU272715 other downstream 2568881 9708864 ~ 9817625 (+) True G201287
TU272771 other downstream 2850589 9990572 ~ 10007687 (+) True smoc1
unassigned_transcript_1139 other downstream 2890013 10029996 ~ 10034827 (+) True LOC120549541
unassigned_transcript_1140 other downstream 2890577 10030560 ~ 10031384 (+) True LOC120549542