RNA id: TCONS_00071675


Basic Information

Item Value
RNA id TCONS_00071675
length 5184
RNA type mRNA
GC content 0.46
exon number 23
gene id XLOC_036704
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 45762484 ~ 45838481 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAAGGcaacattgttcagtcagtcTATTCGCCAAGGCGGATCCAAAAACGCTAATGCGAGACAATAATGCCCTTACACCCTTTAAAGAACTCGCTTTAGATGCTCTGTCTATCGAAAGGAGAGGAACGAGTGAATACTCGCTTCATTAAAGTGAAAACGTCACGACAGACCTTTAAGTGACGTTGCAAGCGCTGACGTTTTTATGACGGAGCTGATTCAGTGGTCTCGGGTGTCGACTGTCACTCTGGCGAGCAGTGCAGGTGGTCAGCGGAGCTTTTACCAACTCAACAGCTGCTGACAAAAAGTGCAAAACACAGATTGGATTAACAGTTCAAGAGCTTTCCGGACTTGCCCATTCTTTCCCAGgaaatcaaaacacattttccatTACGGCAGAAGACGGGAGCTGACACTTCTCTCTTCTGTTGTACTACTGAGGACATCCAGGAGATTGTGAGTGTGGGTGGCACTCGTTTAAAAGACTGCGATGCACCGCTTAAGGACTTGTGCGGCACGGCTCCGGCCTATAACGGCCTCACAGACTGCTAAAAATCTATCACAGCAGGGGCCGGCAGCCACACCTAGGACGTTTCAGCCATTGAGGTGCTTCTCGTCACCTGTGGCAGCAGAGCCGTTTCTGAACGGAACCAGCTCTAATTATGTTGAGGAGATGTACTATGCGTGGTTGGAGAATCCCAAGAGTGTGCACAAGTCTTGGGACATTTTCTTCAGGAATGCAAACGCTGGTGCCCCTCCAGGTACAGCTTACCAGAGTCCTCCTCCATTGGGTGTGAGCCTGGCTGGACTTGCTCAGGCCCAGTCACTCGTGGGGGCGCAGCCGAATGTAGAGAAGCTGGTGGAAGACCATCTGGCAGTTCAGTCCCTTATCAGGGCCTATCAGATACGTGGTCACCATGTGGCTCAGCTGGACCCTCTTGGGATCATGGATGCTGATCTGGATTCATGCGTTCCCACCGACATTATTACATCATCGGATAAACTCGGTTTCTATGGGCTGGAAGAGTCTGATCTGGATAAAGTGTTCCGCTTGCCCACCACCACCTTTATCGGGGGTGACGAGAGTGCTCTGCCCCTCAGGGAAATCATCCGTCGCTTAGAGATGGCGTATTGCCAGCATATTGGGGTCGAGTTCATGTTCATTAATGACCTAGACCAGTGTCAGTGGATCAGGCAGAAGTTTGAGCGCCCTGGAGTCATGCAGTTCAGCCTGGAGGAGAAGAGAACACTTCTGGCTCGCATGGTCCGCTCCACCAGGTTTGAGGAGTTCCTGCAGAGGAAATGGTCATCTGAGAAACGCTTCGGACTGGAAGGCTGTGAAAGTCTGATCCCTGCACTCAAAACCATCATTGATAAATCCAGTGAGAACGGCGTAGACACTGTCATCATGGGCATGCCTCACAGAGGACGTTTGAACGTGCTTGCCAATGTGATCCGTAAGGAATTGGAGCAAATTTTCTGTCAGTTTGACTCTAAATTGGAAGCTGCTGATGAGGGGTCAGGAGATGTCAAGTACCACTTGGGCATGTACCACAGGAGAATAAATCGTGTGACTAACAGGAATATTACCTTGTCATTGGTGGCCAACCCTTCCCATCTAGAAGCGGTGAACCCGGTGGTGCAGGGCAAGACTAAGGCTGAGCAGTTTTACAGCGGAGATACTGATGGAAAAAGGGTGATGTCAATTTTGCTTCATGGTGATGCTGCGTTCGCCGGTCAGGGCATTGTCTATGAAACCTTCCATTTGAGCGATCTTCCCTCGTACACCACGCATGGCACTGTGCATGTGGTGGCCAACAACCAgATCGGTTTCACTACAGATCCCCGTATGGCACGCTCATCTCCATATCCAACCGATGTTGCCCGTGTGGTCAATGCCCCTATCTTCCACGTCAATGCAGATGATCCTGAAGCTGTGATGTACGTGTGTAATGTGGCCGCAGAATGGAGGGCCACCTTCCACAAAGATGTGGTGGTGGATCTGGTGTGCTATCGACGTAATGGCCACAACGAGATGGATGAGCCAATGTTCACTCAGCCACTGATGTACAAACAGATCAAGAAGCAGAAAGGAGTTCTGCAGAAATACGCTGAGAAGCTCATTGCTGAAGGTGCCGTTACGCGACAGGAGTATGAGGTCCAGATTGCGAAGTATGATAAAATCTGTGAGGAAGCTCATTCTCGCTCTAAGGATGAGAAGATCCTTCACATCAAGCACTGGCTGGACTCCCCCTGGCCAGGTTTTTTCACTCTTGACGGACAACCCAAGAGCATCAGCTGCCCATCTACTGGTCTGCCAGAGGAAGAACTGGCCCAAATTGGACAAGTGGCATCGTCTGTACCTGTGGAGGACTTCACAATTCATGGAGGTCTGAGTCGTATTCTGAAAGGCCGTGGTGACATGATCAAGAACAGGACAGTGGACTGGGCTCTTGGAGAGTATATGGCTTTTGGATCTCTGCTCAAGGAGGGCATCCATGTGCGTCTCAGTGGCCAAGATGTGGAGAGAGGAACCTTCAGCCACCGTCACCATGTTCTTCACGATCAGAATGTAGACAAAAGGATCTGCATACCCATGAACCACATGTCCCCTAACCAAGCCCCATACACTGTGTGCAACAGCTCTCTGTCAGAGTATGGAGTGCTAGGGTTCGAGTTAGGCTTTGCCATGGCCAGCCCCAATGCTCTGGTTCTTTGGGAGGCCCAGTTTGGAGACTTCCATAACACTGCTCAGTGTATAATAGATCAGTTCATTTGTCCTGGCCAAGCCAAATGGGTCCGCCAAAATGGCATTGTCTTACTGCTGCCACATGGCATGGAGGGCATGGGTCCAGAGCACTCATCTGCCCGTCCAGAGCGCTTTCTGCAGATGTGCAATGATGACCCTGACTTCAACCCTAAAATCACTGATGACTTTGATGTGCGTCAGCTTTATGACTGCAACTGGATTGTGGTAAACTGTTCAAATCCCGCCAACTATTTCCATGTGATAAGGAGGCAGATCCTCCTTCCCTTCAGGAAACCCctgattgtCTTCACCCCGAAATCTCTGCTTCGTCATCCAGAGGCCAAATCTAATTTTGACCAGATGCTACCAGGCACTCATTTCCAGCGTGTGATCACAGATGATGGGCCCCCAGCTCAGAACCCTTCAGAGGTGAAGCGGATTGTCTTCTGTACAGGAAAAATCTATTACGAGCTCACACGTGAACGTAAAGCACGCAATATGGAGAACTCTGTGGCCATCACTCGAATTGAGCAGCTCTCTCCTTTCCCTTTTGACCTGGTGAGAGCTGAGACTGAGAAATTTCCCAACGCTGACCTGGTCTGGTGTCAAGAGGAACATAAGAACCAAGGATACTACGACTACGTCAAGCCCCGGATGCGCACCACCATCAATCGTACCAAGCCTGTTTGGTATGCTGGCCGTGAACCTGCCGCCGCCCCGGCCACCGGAAACAAGAACACCCATCTTCTGGAGCTGAAGCGTTTCCTGGACACTGCCTTCAATCTGGATGCCTTCAAAGACCACATCTGAATCTGTCTCCGCTACAAAGAAAACGAAAACCCCCATTCATCCCACCAACCAAAACAAACCATGCCAAATTATTTTATTCATCCCCCCCAAATAACAAATAGTGCTTTGCTAACACTCACTCTCCGTCCAAAAATCACCCTCTTCTGCAAGTTTCAGCACTTTCCAATTCATGCTGTTcattttaaaaggatagttcactcaaaaataaaaatgcggCCTTATTTACTTAATCTTGACTTGTTTGAGAACATTGAGTTTATCTTATCTAATGTTGGAAgccggtaaccattgatttccatagtatttatttttcctaccatggatgtcagtgatatttttcaaaacatctttttagtGATCAActcaaagggtgagtaaattaagacAGACttctcatttttggatgaactgtccctttaagacttgCCCAGATCAACAATACTGAAAGCTTGCAAACCGCaggatacactgcaaaaatgcttttcttaattagatttttgtcttgtttctagtccaaatgtccaaaaattcttaaatcaagaagatttTTCTAgagaagcaaaacatattgtcttgttttgcgAAAAAAAATGCCAATATTAGGTGAGTCTTTCGttgaaacaagctaaataatctgccaatggggtaagcaaaataatctaacgTCACAAggaaaaaacagatttttttttcttacctcattggcagattgttttggttgttttaagGAAAGACTCGCTTaatattgacatattatttctcaaaacaagacaatgctTTGCTTACCCAGAAAATACTTCtcgatataagaatttttagacatttggactagaaacaagacaaaaaaacaacaaattttgcAGTGTAGGCGTAAGAAAGAGATTACACATGAATAACAGCACATATTTTAATGGACCTAAAATCTTTTCAACCAAAGCACAGTTACAACCCTCTAAAGAACGTACTTTTACAGTAATCAACAACTCTTGCCTCTGAACTCATTTCCCTAAGCTTCCATGTAGGGTTGTCATGATTTGTGTATGCTACCTTTGCTGTATGGCTttaattttatgcttgtttttcaATAATTGTGGACTAAATTCAGATGAATGGATGATTTTGGCACATACATTTGCAGTGTCTGATTAATAGGAAAGATAAGCGGCGAAAACGACACTTTATCTCTACCTTTGCACTgttttctggtaaaaaaaaaaaaaagaaaataggaaAAACATTTGGTTCACTGAAGTGGATGTTTCAGACGtattattgtatttatgtataaaaaaaataactttgtaTTCTGAGATGAAAGGTTTGGTGTGAAAATCGGGCCAGTGTGGAAAACTCTTTACATGCATGCTCATCAGTTTTGCCCCAGGATCATTGTTTATAGATTGCATCGTGTACCCTGCACATGTGGCTGATAAATATCCATGATAACTTGTGCCATAGAGCCCGGCCCAGCAGCAGAGACATTCAATATGGCAAGACAGACACAAATACACCTGTCTCTGGGTGATATTTTATAGAAACTCATGAGAacgctacttttttttttttggatcattcAGATTCTCATAACGGTTCAGCTTCATACAATAAACTCATAATCTTCTGAGA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0060047 heart contraction biological_process
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2143 Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity. Acts upstream of or within heart contraction. Predicted to be part of oxoglutarate dehydrogenase complex. Predicted to be active in mitochondrion. Is expressed in several structures, including immature eye; lens; mesoderm; musculature system; and pronephric duct. Orthologous to human OGDH (oxoglutarate dehydrogenase).

Ensembl:

ensembl_id ENSDART00000170485

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072518 lncRNA downstream 3371 45755643 ~ 45760083 (-) False XLOC_036703
TCONS_00071673 lncRNA downstream 3371 45755771 ~ 45760083 (-) True XLOC_036703
TCONS_00071670 lncRNA downstream 7058 45755643 ~ 45756396 (-) False XLOC_036703
TCONS_00072083 lncRNA downstream 291237 45468994 ~ 45472217 (-) True XLOC_036701
TCONS_00071661 lncRNA downstream 361314 45401050 ~ 45402140 (-) True XLOC_036698
TCONS_00071694 lncRNA upstream 638010 46476491 ~ 46486000 (-) True XLOC_036712
TCONS_00072519 lncRNA upstream 789182 46627663 ~ 46629378 (-) True XLOC_036716
TCONS_00072520 lncRNA upstream 1251630 47090111 ~ 47092310 (-) False XLOC_036721
TCONS_00072521 lncRNA upstream 1251630 47090111 ~ 47093938 (-) True XLOC_036721
TCONS_00071707 lncRNA upstream 1308883 47147364 ~ 47152023 (-) False XLOC_036722
TCONS_00071669 mRNA downstream 3367 45754871 ~ 45760087 (-) False XLOC_036703
TCONS_00071672 mRNA downstream 4317 45755648 ~ 45759137 (-) False XLOC_036703
TCONS_00071671 mRNA downstream 7020 45755646 ~ 45756434 (-) False XLOC_036703
TCONS_00071668 mRNA downstream 33696 45708567 ~ 45729758 (-) True XLOC_036702
TCONS_00071667 mRNA downstream 34206 45708567 ~ 45729248 (-) False XLOC_036702
TCONS_00071679 mRNA upstream 11658 45850139 ~ 45939691 (-) False XLOC_036705
TCONS_00071680 mRNA upstream 14269 45852750 ~ 45939691 (-) False XLOC_036705
TCONS_00071681 mRNA upstream 20955 45859436 ~ 45867358 (-) False XLOC_036705
TCONS_00071683 mRNA upstream 123136 45961617 ~ 46005359 (-) True XLOC_036706
TCONS_00071684 mRNA upstream 186641 46025122 ~ 46045172 (-) True XLOC_036707
TCONS_00071662 other downstream 351709 45411581 ~ 45411745 (-) True XLOC_036699
TCONS_00071656 other downstream 561377 45200860 ~ 45202077 (-) True XLOC_036696
TCONS_00071642 other downstream 1418712 44341541 ~ 44344742 (-) True XLOC_036682
TCONS_00071640 other downstream 1421839 44340504 ~ 44341615 (-) False XLOC_036682
TCONS_00071629 other downstream 1722541 44040796 ~ 44040913 (-) True XLOC_036678
TCONS_00071682 other upstream 45284 45883765 ~ 45896826 (-) True XLOC_036705
TCONS_00071714 other upstream 1436815 47275296 ~ 47275410 (-) True XLOC_036727
TCONS_00071716 other upstream 1667404 47505885 ~ 47506001 (-) True XLOC_036730
TCONS_00071722 other upstream 1972283 47810764 ~ 47823318 (-) True XLOC_036731
TCONS_00071727 other upstream 2828809 48667290 ~ 48669127 (-) True XLOC_036736

Expression Profile

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