RNA id: TCONS_00073034


Basic Information

Item Value
RNA id TCONS_00073034
length 528
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_037103
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22080122 ~ 22080989 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATGGGCAGAATCATCTTCTATGAGGACAGGAACTTCCAGGGTCGCTCTTATGAATGTATGGGTGACTGTGCAGACATGTCTTCTTACATGAGCCGTTGCCACTCTTGTAGAATAGAGAGTGGCTGCTGGATGATGTATGATCGTCCCAACTATATGGGCAATCAGTATTTCTTCAGGAGGGGTGACTATGCTGACTATATGGCTATGTTTGGCATGAATGATTGTATCAGATCCTGCCGAATGATCCCCATGCACAGGGGATCCTTTAGAATGAGGATCTATGAGAGGGAGAACTTTGGCGGTCAGATGCACGAGATGTTGGATGACTGTGACAACATTCAGGACCGTTACCGCATGTCTCACTGCCAATCCTGCCATGTAATGGATGGTCACTGGCTCATGTATGAGCAGGCCCGCTACAGAGGCAAGATGATGTACTTCAGACCTGGAGAGTACAGGAACTTCAGTAATATGGGTGGCACAAGATTCATGAGCATGAGACGTATCAAtgattcttatttttaa

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-116 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

Ensembl:

ensembl_id ENSDART00000065956

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073027 lncRNA upstream 86231 21993188 ~ 21993891 (+) True XLOC_037097
TCONS_00073017 lncRNA upstream 250378 21826734 ~ 21829744 (+) True XLOC_037092
TCONS_00073011 lncRNA upstream 277162 21802075 ~ 21802960 (+) True XLOC_037090
TCONS_00075100 lncRNA upstream 314387 21762019 ~ 21765735 (+) True XLOC_037089
TCONS_00074895 lncRNA upstream 317153 21761696 ~ 21762969 (+) False XLOC_037089
TCONS_00075101 lncRNA downstream 231879 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA downstream 232041 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA downstream 232075 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073038 lncRNA downstream 279108 22359962 ~ 22360742 (+) True XLOC_037106
TCONS_00074896 lncRNA downstream 561532 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073033 mRNA upstream 61818 22017368 ~ 22018304 (+) True XLOC_037102
TCONS_00073032 mRNA upstream 67303 22011912 ~ 22012819 (+) True XLOC_037101
TCONS_00073031 mRNA upstream 75289 22003942 ~ 22004833 (+) True XLOC_037100
TCONS_00073030 mRNA upstream 78344 22000812 ~ 22001778 (+) True XLOC_037099
TCONS_00073029 mRNA upstream 82973 21996461 ~ 21997149 (+) True XLOC_037098
TCONS_00073036 mRNA downstream 270589 22351443 ~ 22366179 (+) False XLOC_037105
TCONS_00073037 mRNA downstream 279065 22359919 ~ 22360742 (+) False XLOC_037106
TCONS_00073039 mRNA downstream 284143 22364997 ~ 22366295 (+) False XLOC_037105
TCONS_00073040 mRNA downstream 284201 22365055 ~ 22366242 (+) True XLOC_037105
TCONS_00073041 mRNA downstream 294477 22375331 ~ 22618558 (+) False XLOC_037107
TCONS_00073026 other upstream 86207 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 88910 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073020 other upstream 94126 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073007 other upstream 367976 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073005 other upstream 520337 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073045 other downstream 310712 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073048 other downstream 496091 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073057 other downstream 577375 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073071 other downstream 925597 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 965413 23046267 ~ 23046385 (+) True XLOC_037119

Expression Profile

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