RNA id: TCONS_00073038


Basic Information

Item Value
RNA id TCONS_00073038
length 677
lncRNA type retained_intron
GC content 0.45
exon number 2
gene id XLOC_037106
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22359919 ~ 22360742 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTACTGAGAGTGTAAGTGCCTCTGTCTCCCTTACTGTCCCTCATTCTCACACAATGTTTTTGCACCATTTAACTGCCAGTGATGTTTTTTTCAGATTGTGTTCTACGAAGACAGGAACTTCCAGGGAAGATCCTATGAGTGCAAGGGAGACACAAGTGACCTTCATTCTTTTTTTAGCCGCTGCAATTCTGCAAGGGTAAAAGGGGGCTTTTGGGTCCTGTATGAGCGGCCAAACTATATGGGTTATCAGTATATTCTGGGTCCAGGAGAATATCCAGATTATCAACATTGGATTGGCTTCAACGATTGTGTCCGATCTTGTCGTCTAGTCAGGCATGTAATTGGAGatctgaagctcaaactctttGAGAGGCCCAACTTTGATGGACAAACATGGGAAGTGACAGAAAGCACCCCGTCCATTCAGGAACGTTTCCTCTGCCGAGAGATCAATTCCTGCAAAGTTCATGAAGCTCCGTGCGTGTTCTTCGAGCATGCAAACTACCGTGGCCGTCAGTACTTCCTTGAGAAGGGAGAGTACAGACGACACACTGAATGGGGGGCCATGCATCCCACTGTGGGCTCTATTCGCCAGATCACCACAGACTGATAAATTGAAAATTGCTCACTAATACTACtgaaaagctttaaaaaataaacatatttgaagAGGCA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050223-2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

Ensembl:

ensembl_id ENSDART00000133841

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075101 lncRNA upstream 46345 22312733 ~ 22313617 (+) False XLOC_037104
TCONS_00075102 lncRNA upstream 46345 22312895 ~ 22313617 (+) False XLOC_037104
TCONS_00075103 lncRNA upstream 46345 22312929 ~ 22313617 (+) True XLOC_037104
TCONS_00073027 lncRNA upstream 366071 21993188 ~ 21993891 (+) True XLOC_037097
TCONS_00073017 lncRNA upstream 530218 21826734 ~ 21829744 (+) True XLOC_037092
TCONS_00074896 lncRNA downstream 281644 22642386 ~ 22642685 (+) True XLOC_037110
TCONS_00073062 lncRNA downstream 334891 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00075104 lncRNA downstream 628199 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073069 lncRNA downstream 643134 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075105 lncRNA downstream 643134 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073035 mRNA upstream 278973 22080238 ~ 22080989 (+) True XLOC_037103
TCONS_00073034 mRNA upstream 279108 22080122 ~ 22080854 (+) False XLOC_037103
TCONS_00073033 mRNA upstream 341658 22017368 ~ 22018304 (+) True XLOC_037102
TCONS_00073032 mRNA upstream 347143 22011912 ~ 22012819 (+) True XLOC_037101
TCONS_00073031 mRNA upstream 355129 22003942 ~ 22004833 (+) True XLOC_037100
TCONS_00073039 mRNA downstream 4255 22364997 ~ 22366295 (+) False XLOC_037105
TCONS_00073040 mRNA downstream 4313 22365055 ~ 22366242 (+) True XLOC_037105
TCONS_00073041 mRNA downstream 14589 22375331 ~ 22618558 (+) False XLOC_037107
TCONS_00073042 mRNA downstream 15037 22375779 ~ 22618558 (+) False XLOC_037107
TCONS_00073044 mRNA downstream 27944 22388686 ~ 22585271 (+) False XLOC_037107
TCONS_00073026 other upstream 366047 21993128 ~ 21993915 (+) False XLOC_037097
TCONS_00073021 other upstream 368750 21990058 ~ 21991212 (+) False XLOC_037096
TCONS_00073020 other upstream 373966 21984109 ~ 21985996 (+) True XLOC_037095
TCONS_00073007 other upstream 647816 21571433 ~ 21712146 (+) False XLOC_037087
TCONS_00073005 other upstream 800177 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073045 other downstream 30824 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073048 other downstream 216203 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073057 other downstream 297487 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073071 other downstream 645709 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073073 other downstream 685525 23046267 ~ 23046385 (+) True XLOC_037119

Expression Profile

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