RNA id: TCONS_00074897


Basic Information

Item Value
RNA id TCONS_00074897
length 792
lncRNA type intronic
GC content 0.36
exon number 3
gene id XLOC_037122
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23126156 ~ 23128231 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggcgtgactcctttttcattgcccgggatttagcaggcagacgcagcttctgcaatggtcgacattaactgctcccagcagcggatctgattaacacgataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcCGAGGTGCATGCAGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacaagtatccatcaaaactgtatacatttgagatatatcagagactctttgtggggctggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcactgagttgccttagatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaatacatgttatggtctttaatccatcttcccattcttatttaattgttattgacaggaaagtctgtttatctgtttttcctagtgtatattgtgcttacaatatagaaacgaagatttattttctaaggttacagccagaagttaattgaattaattttaaatcaaatatgcatggttaattttatttagataattaagttcataatacttaattaaaataagtacagtcactatatagcaatgtataagtaagttaagttt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075105 lncRNA upstream 119178 23003876 ~ 23006978 (+) False XLOC_037117
TCONS_00073070 lncRNA upstream 119490 23003936 ~ 23006666 (+) False XLOC_037117
TCONS_00073069 lncRNA upstream 121706 23003876 ~ 23004450 (+) False XLOC_037117
TCONS_00075104 lncRNA upstream 128096 22988941 ~ 22998060 (+) True XLOC_037116
TCONS_00073062 lncRNA upstream 428302 22695633 ~ 22697854 (+) True XLOC_037112
TCONS_00074899 lncRNA downstream 193603 23321834 ~ 23333979 (+) True XLOC_037126
TCONS_00075106 lncRNA downstream 235617 23363848 ~ 23419530 (+) False XLOC_037127
TCONS_00075107 lncRNA downstream 235623 23363854 ~ 23456345 (+) False XLOC_037127
TCONS_00073081 lncRNA downstream 236351 23364582 ~ 23367209 (+) False XLOC_037128
TCONS_00073082 lncRNA downstream 236380 23364611 ~ 23367004 (+) False XLOC_037128
TCONS_00073074 mRNA upstream 69916 23049500 ~ 23056240 (+) True XLOC_037120
TCONS_00073072 mRNA upstream 102868 23009608 ~ 23023288 (+) True XLOC_037118
TCONS_00073068 mRNA upstream 118215 23003208 ~ 23007941 (+) False XLOC_037117
TCONS_00073067 mRNA upstream 186646 22929675 ~ 22939510 (+) True XLOC_037115
TCONS_00073065 mRNA upstream 323984 22781019 ~ 22802172 (+) False XLOC_037114
TCONS_00073076 mRNA downstream 96530 23224761 ~ 23231203 (+) True XLOC_037123
TCONS_00073077 mRNA downstream 104670 23232901 ~ 23234064 (+) True XLOC_037124
TCONS_00073079 mRNA downstream 127179 23255410 ~ 23313342 (+) False XLOC_037125
TCONS_00073078 mRNA downstream 127179 23255410 ~ 23313342 (+) True XLOC_037125
TCONS_00073085 mRNA downstream 383682 23511913 ~ 23625232 (+) False XLOC_037129
TCONS_00073073 other upstream 79771 23046267 ~ 23046385 (+) True XLOC_037119
TCONS_00073071 other upstream 119178 23006451 ~ 23006978 (+) True XLOC_037117
TCONS_00073057 other upstream 463428 22658229 ~ 22662728 (+) True XLOC_037111
TCONS_00073048 other upstream 549097 22576945 ~ 22577059 (+) True XLOC_037108
TCONS_00073045 other upstream 678578 22391566 ~ 22447578 (+) False XLOC_037107
TCONS_00073080 other downstream 236011 23364242 ~ 23367209 (+) False XLOC_037128
TCONS_00073088 other downstream 419414 23547645 ~ 23555977 (+) True XLOC_037129
TCONS_00073090 other downstream 568693 23696924 ~ 23700456 (+) True XLOC_037131
TCONS_00073100 other downstream 757412 23885643 ~ 23886737 (+) True XLOC_037136
TCONS_00073118 other downstream 962676 24090907 ~ 24102291 (+) False XLOC_037141

Expression Profile

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