Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073897 |
| length | 859 |
| RNA type | processed_transcript |
| GC content | 0.55 |
| exon number | 6 |
| gene id | XLOC_037632 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 7515864 ~ 7539326 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010882 | regulation of cardiac muscle contraction by calcium ion signaling | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0006936 | muscle contraction | biological_process |
| GO:0045214 | sarcomere organization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0055117 | regulation of cardiac muscle contraction | biological_process |
| GO:0060538 | skeletal muscle organ development | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0005882 | intermediate filament | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-980526-221 | Acts upstream of or within several processes, including heart contraction; regulation of cardiac muscle contraction by calcium ion signaling; and sarcomere organization. Located in Z disc. Is expressed in several structures, including cardiovascular system; hindbrain neural plate; mesoderm; musculature system; and pectoral fin. Used to study myofibrillar myopathy 1. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Orthologous to human DES (desmin). |
| ensembl_id | ENSDART00000139071 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075291 | lncRNA | downstream | 16904 | 7499260 ~ 7505531 (-) | True | XLOC_037631 |
| TCONS_00073887 | lncRNA | downstream | 162951 | 7357819 ~ 7359484 (-) | True | XLOC_037626 |
| TCONS_00074961 | lncRNA | downstream | 973639 | 6531549 ~ 6548796 (-) | True | XLOC_037614 |
| TCONS_00073869 | lncRNA | downstream | 1020342 | 6414784 ~ 6502093 (-) | True | XLOC_037612 |
| TCONS_00075290 | lncRNA | downstream | 2476446 | 5044975 ~ 5045989 (-) | True | XLOC_037603 |
| TCONS_00075292 | lncRNA | upstream | 402746 | 7941769 ~ 7942597 (-) | True | XLOC_037636 |
| TCONS_00075293 | lncRNA | upstream | 621318 | 8160341 ~ 8163995 (-) | True | XLOC_037637 |
| TCONS_00075294 | lncRNA | upstream | 745132 | 8284155 ~ 8286208 (-) | True | XLOC_037638 |
| TCONS_00073916 | lncRNA | upstream | 1470100 | 9009123 ~ 9024269 (-) | False | XLOC_037644 |
| TCONS_00073915 | lncRNA | upstream | 1470100 | 9009123 ~ 9024269 (-) | False | XLOC_037644 |
| TCONS_00073894 | mRNA | downstream | 77682 | 7423916 ~ 7444753 (-) | True | XLOC_037630 |
| TCONS_00073893 | mRNA | downstream | 77845 | 7410798 ~ 7444590 (-) | False | XLOC_037630 |
| TCONS_00073892 | mRNA | downstream | 77845 | 7410798 ~ 7444590 (-) | False | XLOC_037630 |
| TCONS_00073891 | mRNA | downstream | 101300 | 7410798 ~ 7421135 (-) | False | XLOC_037630 |
| TCONS_00073890 | mRNA | downstream | 128023 | 7394229 ~ 7394412 (-) | True | XLOC_037629 |
| TCONS_00073898 | mRNA | upstream | 82599 | 7621622 ~ 7640692 (-) | False | XLOC_037633 |
| TCONS_00073899 | mRNA | upstream | 95824 | 7634847 ~ 7655243 (-) | False | XLOC_037633 |
| TCONS_00073900 | mRNA | upstream | 101648 | 7640671 ~ 7652792 (-) | False | XLOC_037633 |
| TCONS_00073902 | mRNA | upstream | 123615 | 7662638 ~ 7673856 (-) | True | XLOC_037634 |
| TCONS_00073903 | mRNA | upstream | 139113 | 7678136 ~ 7683799 (-) | False | XLOC_037635 |
| TCONS_00073875 | other | downstream | 804634 | 6717677 ~ 6717801 (-) | True | XLOC_037618 |
| TCONS_00073868 | other | downstream | 1113164 | 6409157 ~ 6409271 (-) | True | XLOC_037613 |
| TCONS_00073841 | other | downstream | 3075331 | 4443918 ~ 4447104 (-) | True | XLOC_037598 |
| TCONS_00073830 | other | downstream | 4002724 | 3508318 ~ 3519711 (-) | True | XLOC_037592 |
| TCONS_00073827 | other | downstream | 4025856 | 3490831 ~ 3496579 (-) | True | XLOC_037591 |
| TCONS_00073901 | other | upstream | 102737 | 7641760 ~ 7655301 (-) | True | XLOC_037633 |
| TCONS_00073935 | other | upstream | 2204536 | 9743559 ~ 9805319 (-) | False | XLOC_037657 |
| TCONS_00073936 | other | upstream | 2231312 | 9770335 ~ 9805319 (-) | True | XLOC_037657 |
| TCONS_00073961 | other | upstream | 3306895 | 10845918 ~ 10846549 (-) | True | XLOC_037667 |
| TCONS_00073965 | other | upstream | 4009749 | 11548772 ~ 11550397 (-) | False | XLOC_037669 |
