RNA id: TCONS_00073925


Basic Information

Item Value
RNA id TCONS_00073925
length 1751
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_037650
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9322424 ~ 9348058 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTGTGTTGTGTTTGTACAGCTGAGAGCGGAGGGCATCGACACTACACAGAGATGGCAGCCCTTCAGTAAGATGTTGGAAAAGACCCCAACTGATAAAAATCATCACCTTCACATTCATCCCGCATTCAAACTCTCCTGGACTGTTAAATGCCCTCTCAATACAAAGGGCTAAAATGTTTGTGGTCTCCATGCCAAGATGTCTACAGATTTGTGTGTCTTTGGTAATGGTGTCCCGACTACAAGGCAGGGTTTCAGCTCCAGCACGCCTGGAGGCTCTTGTTGAACAGCCCTTCACGCTGAGCTGTACGCTTGTCAAGGCTAGAGGAGAATCAGTGCATCAGATCCGCTGGCTGGATGTGCAGAATCAGACATTAATCTCCTATCAGCCTGGTCAACAAGACAGCGTGAGCGGTCAACAGCATGTGGAGCTCGCTGCTTCTCCAAGAGACGCCAGCGCTATCACTATTAAACGTGTAAGCCATAGGGACGAGGGATGTTACACTTGCATCTTCGATATTCTTCCTAAAGGCTCAAGGGAAGGGCAGACTTGTCTTACAGTTACAGCAACTGTGATTCCAGAGGGCAATAAGACTGCAGTGGGTGGAAAACAAATCACTCTGGCCTGTCGGTACGGCCTGCCagagaaagtcaaacaggttttgtGGAAGAAGATTGTGACTAAAGCAGAATCCCGTGAAATTGCGTTTTTTGCAAAGCAGAGTGATCCTGTGATAGAAGAAGAGTTTGTGGAGCGTGTGAGTCTGAGTCCTTCCCTGTCTGACACACAGCTCACGCTGTGGCCAGTCCAATCCGAAGATGAGGCCTGCTACACCTGTGAGTTTCACACATACCCGGATGTCATAAAGAGCGCCACCAGCTGCCTTACTGTGTTTGTCCTGCCTAAACCTCAAGTAAGCTACAAGACCACATCGCCAGGAGTGATCGAGGCGAACTGTACAGCTGTGGCCCGACCAAAGGCTGAAATAGTGTGGAATGTGGAGGGGAATGACAGAACCATCGGTCCACCTGTGACCATCGATGTCCAGCAGAGTGACGGGACGACTCTGGTCATCAGCACCTTGACCATCCAGGCCGGACTCCTGAAGGACGTCTCCGTCAAATGTCTGGTTCATCATAAAGGACTGGAGACGGCCATTGCTGTTTCCATGAACACTAAAAttggcaCAGCTCTTGCCATCCTGATCTCTGTGACTACAGTTGCTTTTCTACTGGTCCTCTGCCTGTGTTTCTGTTTGTGGAAGTGTGTCCTGCGCAAGGATGAGCCTGAAGAGCATCAGCTACCGAGAAGAAGCCGAGAAAACAGAGAAGCAGACAGCTGAATAATCGTTCTGATTGTGGCAGACTAAAGCTGCAGTTTTCTTTACAATACGAATTTGCTGAGACACCCGTGAAGATGAAAATCTCTTGTCATCAAGTTCCCTACATTTCCTGCCAAAGAAAACCAGTGACACATCTCTACACGAGGAAAGATGACACATTTCCAACAATTTGTGAATCTATCACTAATATAAAGTTTGCAGGACAGAGGCCAATTTAATTAccattaatttgttttaatattggCATCTATAACTTGTAACTAGCTATTCACTCATAGAAAAAGTAAGAACATTTCAGATATAATTATTGTAAGTAATTACAATGCTACCACAAATTCCAGTGACTTTTGTAAATAGTATGGTTTTGTTGTATCTTTCCTGATGCTAATGTTATGATCAAATAGATTCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neural crest.

Ensembl:

ensembl_id ENSDART00000132257

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073922 lncRNA downstream 33354 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00073923 lncRNA downstream 33364 9286419 ~ 9289060 (-) False XLOC_037649
TCONS_00073924 lncRNA downstream 33385 9286419 ~ 9289039 (-) False XLOC_037649
TCONS_00075297 lncRNA downstream 271909 9026383 ~ 9050515 (-) True XLOC_037645
TCONS_00073916 lncRNA downstream 298155 9009123 ~ 9024269 (-) False XLOC_037644
TCONS_00073926 lncRNA upstream 7314 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00074962 lncRNA upstream 1020322 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073971 lncRNA upstream 2207018 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00073972 lncRNA upstream 2209148 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075298 lncRNA upstream 2223254 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00073921 mRNA downstream 39905 9251466 ~ 9282519 (-) True XLOC_037648
TCONS_00073920 mRNA downstream 79647 9230446 ~ 9242777 (-) True XLOC_037647
TCONS_00073919 mRNA downstream 93483 9183837 ~ 9228941 (-) True XLOC_037646
TCONS_00073917 mRNA downstream 96444 9180620 ~ 9225980 (-) False XLOC_037646
TCONS_00073918 mRNA downstream 112593 9183561 ~ 9209831 (-) False XLOC_037646
TCONS_00073927 mRNA upstream 62951 9411009 ~ 9415000 (-) True XLOC_037652
TCONS_00073928 mRNA upstream 67602 9415660 ~ 9419704 (-) True XLOC_037653
TCONS_00073929 mRNA upstream 229685 9577743 ~ 9671244 (-) True XLOC_037654
TCONS_00073930 mRNA upstream 327868 9675926 ~ 9705512 (-) False XLOC_037655
TCONS_00073931 mRNA upstream 331440 9679498 ~ 9689367 (-) False XLOC_037655
TCONS_00073901 other downstream 1667123 7641760 ~ 7655301 (-) True XLOC_037633
TCONS_00073897 other downstream 1783401 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073875 other downstream 2604623 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073868 other downstream 2913153 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073841 other downstream 4875320 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073935 other upstream 395501 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073936 other upstream 422277 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073961 other upstream 1497860 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073965 other upstream 2200714 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073967 other upstream 2203546 11551604 ~ 11551704 (-) True XLOC_037669

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_04192977_04199859.mRNA True 2916 mRNA 0.42 6 CI01000037 4192772 ~ 4201415 (-)