RNA id: XM_039803315.1


Basic Information

Item Value
RNA id XM_039803315.1
length 993
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120560634
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25553418 ~ 25564593 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaggaggagagcaatGACTGGTCAATAGATCCTTTGACGTGGAATATTTCCGTAAAGAGACGATGGAAGAGTAGCGCGTAGCTCCAAGCTATCCCGTATTAACCTCAAATCGAAACGGGATTTAGCCCTGAATCCCACTCGGATCTGGGCTCACGGGAGTTGACAGACAACAGTCTCTCACAGACTGACCCCTTTCTCTTCCCCCGCCTCCCTCCGCTCAGCTACAATCATGATAAAAGCCATTTTAATATTCAACAACCATGGGAAACCAAGGCTTTCTAAATTCTACGAGCATTATAATgaagacacagagcaacagatCATCAGGGAAACCTTCCACTTGGTCTCGAAAAGAGATGAGAACGTCTGTAATTTCCTAGAAGGTGGAATGTTGATTGGAGGATCAGACTACAAGCTGATCTACAGACACTACGCCacactgtactttgtgttttgtgtggacTCCTCAGAGAGTGAACTAGGAATTTTAGACTTAATCCAGGTATTTGTGGAAACGCTGGACAAATGCTTTGAGAACGTCTGTGAGCTCGACTTAATTTTCCATGTAGACAAGGTCCACAACATTCTGGCGGAGATGGTGATGGGTGGGATGGTCCTGGAGACCAACATGAATGAAATCATCACACAGGTGGATGCCCAGAACAAGATGGAGAAGTCCGAGgccGGTATTGCAGGAGCGCCTGCTCGTGCCGTATCAGCTGTAAAGAACATGAACCTCCCGGAAATGCCCAGAAACATCAACATTGGTGACATCAGCATAAAAGTGCCAAATTTACCCTCCTTCAAATAGTGGCAGCGAGATCCTGAAGCTGCAGATGTCAGCCAATGTTTACCGTGATGCAATCTGTTTACCAAAACCTCAAATTACTAACTTTTATCAAAAATATACATCTTGAAGGTACTGTGTGCTTTGACactctttgttttggtgttatctctttgtttttcctattaaagaaaagaatgTTTTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12399 AP3S; AP-3 complex subunit sigma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86263 lncRNA downstream 460055 25090970 ~ 25093363 (-) False mapkapk5
XR_005639413.1 lncRNA downstream 506371 25044895 ~ 25047047 (-) True LOC120560057
TU86157 lncRNA downstream 536538 25014305 ~ 25016880 (-) False rnf165b
TU86168 lncRNA downstream 536538 25014305 ~ 25016880 (-) False rnf165b
TU86132 lncRNA downstream 615978 24876624 ~ 24937440 (-) False lzts3b
TU86426 lncRNA upstream 5383 25569974 ~ 25573095 (-) False G64541
TU86427 lncRNA upstream 48922 25613513 ~ 25625499 (-) True G64541
TU86583 lncRNA upstream 359978 25924569 ~ 25924785 (-) True G64673
TU86615 lncRNA upstream 386943 25951534 ~ 25952579 (-) True G64693
TU86659 lncRNA upstream 614558 26179149 ~ 26180205 (-) True G64730
XM_039803314.1 mRNA downstream 5566 25488482 ~ 25547852 (-) True commd10
XM_039803495.1 mRNA downstream 233331 25259941 ~ 25320087 (-) False dmxl1
XM_039804341.1 mRNA upstream 16878 25581469 ~ 25598226 (-) True cep78
XM_039803613.1 mRNA upstream 94960 25659551 ~ 25663405 (-) False mrps36
XM_039804310.1 mRNA upstream 100240 25664831 ~ 25669286 (-) True LOC120561271
XM_039804309.1 mRNA upstream 104817 25669408 ~ 25672613 (-) True LOC120561270
XM_039803818.1 mRNA upstream 132427 25697018 ~ 25705444 (-) False LOC120560926
XR_005639498.1 other downstream 5566 25489965 ~ 25547852 (-) False commd10
TU86268 other downstream 482655 25066845 ~ 25070763 (-) False LOC120560369
TU85750 other downstream 2272332 23274920 ~ 23281086 (-) False smim15
TU85596 other downstream 2720329 22830195 ~ 22833089 (-) True G63882
XR_005639466.1 other downstream 3926511 21616223 ~ 21626907 (-) False rmi1
TU86475 other upstream 94984 25659575 ~ 25663370 (-) False mrps36
TU86476 other upstream 94984 25659575 ~ 25663370 (-) False mrps36
TU86477 other upstream 94984 25659575 ~ 25663370 (-) True mrps36
TU86478 other upstream 94984 25659575 ~ 25663370 (-) False mrps36
TU86779 other upstream 875443 26440034 ~ 26447513 (-) True G64821

Expression Profile