RNA id: XM_039804310.1


Basic Information

Item Value
RNA id XM_039804310.1
length 1844
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC120561271
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25664831 ~ 25669286 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGCACTGTTAGAAGTAGAAGTGACTTACTTACTGATTTGTTAAAAGTGGCTGCCCACTATCATGTTGGACTTTGTGAGTTTGTCTATTCAGGGTCCAAAAAACAGGAACCCACAAACTTACAGTATaggacagacaaacacaccaaCAACCATACTTAACCggtacacacacaatactatcATTCAGTTAAAGAGGGCAGGGAAACGAGTAAACATTGCAGTTTTGTAACTTGGCAGCTGCCAATCAGAGCAGCTCTCACCTAGACCCCTCCCCTGCTTCAGAGAGATTTATAGTGGCCTTCTGCTCAACTCTAATGTAGCTTCAGCCTTTCAAAGTCTAAGCAGTCAGGGATCCACACAGCTGCAGGACCATGACTCCAGGAAAGAAGGGAATCTTGGAGCGTCTTGACGCTGGGGAGGTTGTGATTGGCGATGGAGGCTTTGTGTTTGCCCTGGAGAAGAGAGGCTACGTGAAGGCCGGTCCGTGGACCCCTGAAGCCGCCGCAGAGCACCCTGAAGCAGTGCGACAGCTGCACAGGGAGTTCCTGAGGGCCGGGGCCAATGTTATGCAGACCTTCACCTTTTACGCCAGTGATGACAAACTGGAGAACAGAGGCAACAAAGTCACCTTCACTGGAGCTCAGATCAACGAGGCCGCCTGTGATTTGGCCCGTGAGGTTGCCAATGAAGGCGATGCTCTGGTTGCCGGAGGAGTGTGTCAGACTCCATCCTACCTCAGCTGCAAGAGTGAGACAGAGGTGAAGGGCATCTTGAAGAAACAGCTGGATGTTTTCATCAAGAAAAACGTGGACTTCCTGATAGCTGAGTACTTTGAGCATGTTGAAGAGGCCGTATGGGCTGTGGAGGTGCTGAAGGAGACAGGGAAGCCTGTGGCTGCTAGTATGTGCATCGGACCAGATGGAGACATGCACGGTGTTTCACCTGGAGAGTGTGCTGTCAGGCTGGTAAAAGCAGGTGCCCAGATTGTTGGAGTCAACTGCCACTTTGACCCCATGACCTGCGTGAAAACTGTCAAGATGATGAAGGAGGGAGTGGAGAAGGCCGGGCTGAAGGCTCACTACATGGTGCAGCCCCTGGCATACCACACCCCCGACTGCAACTGTCAGGGATTCATCGATCTGCCAGAATTCCCCTTCGGTCTGGAGCCCAGGATCCTGTCCCGCTGGGACATGCACAAGTATGCCAGAGAGGCCTTCAATGCTGGCATTCGCTTCATTGGTGGCTGCTGTGGATTTGAGCCTTATCACATCAGGGCAGTGGCAGAGGAGCTGGGCCCCGAGAGAGGCTTCCTCCCAGCCGCGTCAGAGAAACACGGCAACTGGGGTGCTGGTCTGGAGATGCACACCAAGCCCTGGGTCAGAGCCAGAGCCCGTCGTGACTACTGGGAGAACCTGAAGCCAGCCTCTGGTCGTCCCCAGTGTCCCTCCATGTCTGCCCCTGATGGCTGGGGTGTTACCAAGGGCCACACTGATCTTATGCAGCAGAAAGAGGCCACCTCTCAGGACCAACTCAAACAGCTGTTCGACAGGTCAAAGAGCCACTAAGTCAGTGACAGAGTCAACTGACGCTGCACAGTGGTGTGCACTATCTTTAAACAGTGCTGCACCTAACACATATAATGTTAGGGGCCGAATGTTCACTTGAGACTGTCACTGTTCTGTGCAATCTATTGACTGTAAAACTGTAGTTTATGTGTGGCCACAGTATTGTCTCAAGGCAGGAGTCGGCCCATGTTAAGATCGGGACTTTTTTGTTTTCCAGGACTCTGGACCAgattgtttaataaaaaattatctAATAAAATGTGACTTGGTCACTTGA

Function

GO:

id name namespace
GO:0009086 methionine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0047150 betaine-homocysteine S-methyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity molecular_function

KEGG:

id description
K00544 BHMT; betaine-homocysteine S-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86427 lncRNA downstream 39332 25613513 ~ 25625499 (-) True G64541
TU86426 lncRNA downstream 91736 25569974 ~ 25573095 (-) False G64541
TU86263 lncRNA downstream 571468 25090970 ~ 25093363 (-) False mapkapk5
XR_005639413.1 lncRNA downstream 617784 25044895 ~ 25047047 (-) True LOC120560057
TU86168 lncRNA downstream 647951 25014305 ~ 25016880 (-) False rnf165b
TU86583 lncRNA upstream 255283 25924569 ~ 25924785 (-) True G64673
TU86615 lncRNA upstream 282248 25951534 ~ 25952579 (-) True G64693
TU86659 lncRNA upstream 509863 26179149 ~ 26180205 (-) True G64730
TU86666 lncRNA upstream 522698 26191984 ~ 26245476 (-) True G64735
TU86674 lncRNA upstream 535009 26204295 ~ 26294620 (-) True G64742
XM_039803613.1 mRNA downstream 1426 25659551 ~ 25663405 (-) False mrps36
XM_039804341.1 mRNA downstream 66605 25581469 ~ 25598226 (-) True cep78
XM_039803316.1 mRNA downstream 100238 25553591 ~ 25564593 (-) False LOC120560634
XM_039803315.1 mRNA downstream 100240 25553418 ~ 25564591 (-) True LOC120560634
XM_039803314.1 mRNA downstream 116979 25488482 ~ 25547852 (-) True commd10
XM_039804309.1 mRNA upstream 122 25669408 ~ 25672613 (-) True LOC120561270
XM_039803818.1 mRNA upstream 27732 25697018 ~ 25705444 (-) False LOC120560926
XM_039803817.1 mRNA upstream 27732 25697018 ~ 25705444 (-) True LOC120560926
XM_039804188.1 mRNA upstream 125807 25795093 ~ 25801032 (-) True LOC120561188
XM_039804187.1 mRNA upstream 125807 25795093 ~ 25801031 (-) False LOC120561188
TU86475 other downstream 1461 25659575 ~ 25663370 (-) False mrps36
TU86476 other downstream 1461 25659575 ~ 25663370 (-) False mrps36
TU86477 other downstream 1461 25659575 ~ 25663370 (-) True mrps36
TU86478 other downstream 1461 25659575 ~ 25663370 (-) False mrps36
XR_005639498.1 other downstream 116979 25489965 ~ 25547852 (-) False commd10
TU86779 other upstream 770748 26440034 ~ 26447513 (-) True G64821
TU86838 other upstream 799872 26469158 ~ 26514720 (-) False dynll1
TU87012 other upstream 1136386 26805672 ~ 26811283 (-) False LOC120560729
TU87050 other upstream 1218721 26888007 ~ 26891271 (-) False sb:cb288
TU87051 other upstream 1218721 26888007 ~ 26891271 (-) False sb:cb288

Expression Profile