RNA id: XM_039803973.1


Basic Information

Item Value
RNA id XM_039803973.1
length 4377
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC120561015
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20328277 ~ 20348190 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGGAGCCTGACATCCTCCCCTGAGACCTATGCTATCCCTGTAGTAGACATGATACAGCTAGAGCAGCAGTCTAGCCCTTTTGTAGCTGTGACAAAATCTATACAGGTAGATGAGAGGCACAATCAGTATGAGAAGACTGATCCTCTgggaaagacaaagacacagcCAGCCAACCAGGTGTTCCTATTTGAGGGAACAAGTGAGTTGGGTCACATGATCAGCAGTGAGAGTAAGTATGACAACAAAAGTGGAGAAGGATCAGAGGGAGCTGATTGGCTAGAGCAACCCAGTGATCATTCCCCATTTATTCTGGTGGACTGCTCCCTTGTCACTCAGACCACTTCAGCCAATCATCATGCAAGTCCAGGAGAAGCTGCTGAGACTCAAATCCAGGCTGATCAATCATTATCCCCAAGCATTTTTGAGTTGGACAAATTTGTTTCCAAGAAACATGTTCTGTCATTTACAATGGCCCAAAATAAAGATGGGCCTACCACTGAAAGCCAATGTGACACTGGCAATAAGAGCATTGGAAATGTGGTGGGTAAAACAACAGAAGCCAGGTCTCTAAGCTCCAGCTCTGGGGGGGATAGAGACACACTAAAGTATAGCCCCGACAGCCTTCACCCAGGTAGTCAAGACGAACTCAGGTCCAATTCTGATGGAGATTCGTCATCAGGCCTAGAAATGGATTACATAATTGTGTCTGGCACAGTAAAAGAAGCTGAGAAAGAGTTTCACGATAGGCCTAAACAGGGTAACAGGCAATCAAAAGGTACAAGCAAGTCCATGGAGACATTTAGCATGCTTTCCTATGCTGCCACAGTACTGCAAACCCATGCCCAAGCTGCAAATAGAGAGCATAGGGAGTACACAGAACAAAGTAGGCAAAAACAAATGATCAGAGATACTGACAGTACACCTAGCAAAGTTACTGAACAAAGTCAAGTTGTCTTATGCGCTCATTACAGTGCAAGTCTTGATGATGCCACTGAGCATCACATGCCAGAAATTGTCGGTCTCAGCCAATCAAAAAATAACTCTGAAGCTTTACATCAGTCAGATTCAAGACCAACAGGTTGCAGTCAAACACAGGTAGAAGAAGGAAGCAATGACGATAAATCAAGCATTGTGGCCAGAAGTGCGTCTCCATCTTTAAGATATCCGTCAGATCACTTCCTGAAAACCAGAGAGGAAGTTTATGTCCATTCACAGATCTCAATGGAAGATTCAGATGAGGGTGGGCAGTCACCCTCTGCACCTCCACCAGACTTTCAAGTCTGGGggggtcagttagcaagacagGACGTACCGCAAACAACATCTGAACCACAATCACCTGTACTTACCAACAGTTCAGTCTCCCGGACCAGCTCTTTGATTGGCACCCCATTAAGTGAATCTGGCATTTCTACTGACAGAGGACTTGGATTACCATTTTCTGGAGATTTGATGGAAGAGGAGAATGATGAGGAAGAGCAGGAGGAGGGAACTGATAAAGAGCACACTACCTTGCCAACATGGACTTCAGAAGTACAAAGTGCGAGTGAGGAAAAACAACAGTTTGGATCTTCTGATCTGCTTAGTTTCACTGAGGAGCTGATTGGAGGTTCTTCATTGCAATCACTCGAACCAAAGAGGGACAGATCCCTACAGAATACAGTGGATTACTACAATGGACAACCTATAAGGACTGTTGATCGTGATAATTGGTCGACTGAACAACAGACTGGAGACCATGAATCTTCTCAAGATAGCTATTCACCTGTTTCAAGAAGACACCAAGATGTGACTTCACAGTTTTCCTCCCAGCCAACCAACGCTGCATACCAGTGGACAGAAAGCGAGAATTTAACTCAGGGTCAAACCCAATATGGCTACAACTACCACCACATTGACCAAAGAACTGAAAACCAGAGTGCCCACCCTGCCTGTTTACATACTAAATCCAACAGCCAACAAAACACCACAGATGTCTATGCTGAGTTTACAACTCATCCCACAGCTATACAGTATGGATCTGAGCAGGCTGAGAGCTATTATGAACCTGGAGGTAATGCCGAGTACAGCTTGGATAATCAAGGTTCCCAGTTTCAATATATGGCTGAAAGCCAGTATGGAGATGACTCCAACCTCATGTGCGCCTCTGAACTTCAGTGCTCTCAGTATCAAGCTGATGGCCAGAGTCAGTATGAGTCAGACCACGCTCATTACCAGTTTGACGGACAGCCAGTCTACCAATCACGTGTACACCCTAAGAGGGAAGATCATACGCGATATGTGCCGGAGGGATGTGTTCACTTTTTTCACTCAAGACAATCCCAACAGGGAGACGGTGCAGCAGGCATGATGGCCTCCAGTGAGGAGGCTGCTGAGGAGAGGGATAACAGAGAAGATCCACCCTCCTCTGCGGATCTGTCAGGTGGGTCCAATCAAAGGAGAAAGTTGGCAGCTCCACCAATGAATGTGTCACTGGACCGCAGTGAGGGGTCACTTCTCTCAGAAGATGCCCTGGACACAGAGGACGAGGCCTCGGATACTGGTGATGACCTTGATGTCAACGTAGATGAGGACACACCTGATGAGGCTGACTCACTGGAGCTCAACAGACACGAGTCTAATCTGGGTGCAGGAGCAGCATCAAGTGATGCCATCGCAGGACACAGATCAGCTGAGGAGAGCAGTGAAAACAGGCTGTGGAGGAGCGTGATGGTTGGAGAGCAGGAGCATCGCATTGATATGAAGTGCATTGAGCCATACAAAAGAGTAATTTCTCATGGAGGTTATTACGCCGAACAGAATGCCATCATCGTGTTTGCAGCATGCTTCCTACCAGACAGCAACTGTGACAATTACAATTATGTAATGGAAAACCTTTTTCTGTATGTAATAAGTACCTTGGAACTAATGGTGGCAGAAGATTACATGATTGTTTACCTGAATGGCGCCACACCTCGCAGGAGGATGCCTGGCTTTACCTGGATGAAAAAGTGCTACCAAATGATAGACAGAAGACTGAAGAAAAACCTTAAGATGTTCATCATAGTCCATCCTTCCTGGTTTATACGGACTTTGCTGGGAATCACCAGACCCTTTATAAGACTGGATACAGAATTGCAAGACACAGCAGCTAAAGCTGACAAGAAGGGGAACTCTTTTGTTTGACAAGATACAAGATACCTGGCTGCTGCCTATCTTCTCCCTGCATTATGCTGTACTTTACCGCAGCATATCTGAATATAAGCCAGCCTGCAGCATGATGTGTATGGCACACGGTTGTTGCAATGGGTTAGAAAGAAAGAAGCTGTGGTAATAAAACATCAGGCCTTTGCTTGTTCTTTGAGGAAAGTACGAATCTGAGAGTGCTGCTGAACCTGTACAGGTCAGAGACTCACTGTGCTGAAGGGAAGATGCTTTATCCTGTATTACTGTACCTTACACAGCACTTAATTGTGTACCCCATCTAGCTTTTGTATTCTTTGACAAATCTTTTAATTTGAACAATACTTTGATAATTATGTAATTCACTTTGGAGGAATTACTAACCgtcttttttacatttatgtgtATTATTCTACGCTGTCAGTTGCCATCTGTATCTTTTGTAACCATGGTAATAATCAGTGTGGATTCTCAGCAGCTGTAGCGAGGCTCATGACTCTTTCACCTAATAActaaacacatgcaaacataaGTTGTATTACAGCCCATCTGCTCACAAATGAACATTTGTGTTGCCTGGACAATTGGGATGTTACTGTACTGTGGCTCTGTCAATAGGCtgaatgttaagagacactcaATTTAGACTGTAATTTTAGGAAGTCAAGGTGCACCCAAAATATGATCCACACATAAAATAATCTTTTTACTGTACACGTCTGTTCTGTTGAAATGGCATGAAACAGAAGTGCCAAGCTGGTTTATGAATAGTTTCCAAGCGTGTAGGTGGCTCCTGTCAGTGTTACATTATGTCGCCATCTCATTCAACACTTCATACAATCTTTAAAGGCTATCATAGGCTGCTCTATTTCCACTGTATGTCACGGTGAAAATACTACGATAATCTATGATGGCCATGAGAGCTCAGCCCACTgcaacaaaacacaagcaaattaagaaaaaaattatttgacaaCCCATGCGCAGCAAAGTAAGGaaacaaccaaatacagaaatgCACTGCAAATTTCAGCATAGTTTTCTGTATTTACTTGTGTTTTCTTACTGTAAGTTGCAGTGCGTTGAGCTCTCAGAGCCACCTTAGTTATCAGTAGCTGCAGTGTTGCATGCTTTCATTTGCTACAGTTTGATATTACTCTGATCTGATAACTCACCTAAAAGCAGAACTGTGTACCAGTGTAATTTAAGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84920 lncRNA downstream 46244 20269120 ~ 20282211 (-) False G63345
TU84906 lncRNA downstream 121933 20205248 ~ 20206522 (-) True G63334
TU84876 lncRNA downstream 217614 20109416 ~ 20110841 (-) False LOC120561469
TU84875 lncRNA downstream 217614 20109482 ~ 20110841 (-) False LOC120561469
TU84843 lncRNA downstream 229657 20096950 ~ 20098798 (-) True G63291
TU84985 lncRNA upstream 44226 20392416 ~ 20392627 (-) True G63397
TU85033 lncRNA upstream 106680 20454870 ~ 20455970 (-) False LOC120560417
TU85048 lncRNA upstream 210155 20558345 ~ 20558857 (-) True G63450
TU85052 lncRNA upstream 271873 20620063 ~ 20620339 (-) True G63454
TU85054 lncRNA upstream 286071 20634261 ~ 20634501 (-) True G63456
XM_039804551.1 mRNA downstream 19822 20305357 ~ 20308633 (-) True rfk
XM_039804643.1 mRNA downstream 146342 20178565 ~ 20182113 (-) False LOC120561476
XM_039802688.1 mRNA upstream 94080 20442270 ~ 20450508 (-) True gna14a
XM_039802689.1 mRNA upstream 94080 20442270 ~ 20449161 (-) False gna14a
XM_039802895.1 mRNA upstream 103404 20451594 ~ 20477805 (-) True LOC120560417
XM_039803736.1 mRNA upstream 143904 20492094 ~ 20497896 (-) True LOC120560855
XM_039804081.1 mRNA upstream 708643 21056833 ~ 21139974 (-) True bmpr1ba
TU84919 other downstream 46244 20270777 ~ 20282211 (-) True G63345
TU84540 other downstream 596882 19711448 ~ 19731573 (-) True LOC120561342
TU84427 other downstream 773561 19549461 ~ 19554894 (-) False LOC120560442
TU84258 other downstream 1128222 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84214 other downstream 1226005 19101241 ~ 19102450 (-) False ficd
TU85094 other upstream 343688 20691878 ~ 20692279 (-) True G63487
XR_005639466.1 other upstream 1268033 21616223 ~ 21626907 (-) False rmi1
TU85596 other upstream 2482005 22830195 ~ 22833089 (-) True G63882
TU85750 other upstream 2926730 23274920 ~ 23281086 (-) False smim15
TU86268 other upstream 4718655 25066845 ~ 25070763 (-) False LOC120560369

Expression Profile