RNA id: TCONS_00000665


Basic Information

Item Value
RNA id TCONS_00000665
length 4857
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_000391
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33217911 ~ 33283689 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTCCTTGCCGCTGTGTGTGATGTTTTGAAGGGGAAATGGGTTCAGATTTCTTGATGGGGACGGAAGAGGgaagtaaataatttaaatgtcactGATATCCGGCAATATACATTAGGGGGACCGTCAACCAACGTTCACACAGTATCCTTGCTCCTGAAAAAAATCGTCTGGATAACCTTCTGAATTCGTAAGGCTGAAGTTTGAGTCCTGTAGCACTCCTGTCTTTGTTACCGTACAGTAGTCGCATAAGGGACGTCCGTAATAAAGTAGCGAATAAATGACAGTCTCATTAACAtgaatcgcttgcttttttaatcaCTTGCTGTTTATCATTTTTACTGTCCTGGTCATTATCTGGTTACCTAGCGATGGTAAGCAGAGGGTCTTCATCTGCTTTGTGCGAACAAAGGACATGTTAACTTGACCAAAACAGATCAATGCTGTTATTATCAATAGCGCGTTTTCCTAAAGCGGAAATTCTGGACTTGTTACCTTGAAGTGCCCTTTGATGTGGCAAGAGTCCGAAAATCATACGGAAGATGGCATCAACTAAAGGAAAAGCTGGAATAAATAATGAAAGCAGTTCTGGTCGGGATAGTGGCAGGACAGAAGCTGGCAGCCCCACGTTACCCGCAGGGGCCGCATCCCTGACCACCAACCGGACCTACACACTAGATGACCTGGATACAATTGCCACCGTTGGTACAGGAACTTTTGGGAGGGTGTTTCTGGTGAAGGATAAAAAGACTAGAGGATTCTTTGCTCTGAAGGCAATGAAGATCCCTGATGTCATTCGTCTAAAGCAGGAGCAGCACGTACATAATGAAAAAGAGGTTTTGACGGAGGTGAACCATCCTTTCCTTGTCAGACTGTTCTGGACGCACCATGATGATCGCTTCCTCTACATGTTGATGGAATATGTGAATGGCGGTGAACTCTTCAGCTATTTACGCAGCCGAGGACATTTCAGTAACAGTACGGGAATGTTTTATTCAGCTGAAATCGTGTGCGCCATTGAATACCTTCACTCCAAAGAAATCGTCTACAGAGACCTGAAGCCAGAGAATATATTGCTGGACAGTGAGGGGCACATTCGACTGACAGATTTCGGGTTTGCTAAAAAGCTCTCCGAAAGGACATGGACTCTGTGCGGCACTCCTGAGTATTTGGCTCCAGAGGTGATTCAGAGTAAAGGTCATGGGCGAGCTGTGGACTGGTGGGCTCTGGGTGTGCTCATCTTTGAAATGCTGGCAGGATATCCACCCTTTTTTGATGATAATCCCTTTGGCATCTACCAGAAGATTCTGGCCGGAAAGCTGGAGTTTCCTCGGCATCTGGATTTATATGTAAAGGATCTAATAAAGAAGTTTCTCGTGACTGACCGGGAAAGAAGGCTTGGAAACATGAAGAATGGAGCCGATGATGTGAAAAAGCACAGATGGTTTAAGTCAGTAAACTGGGAGTCTGTACCCTGTAGAAAGCTGAAGCCACCCATAGTTCCAAAGGTGTCCCACGAGGGAGACACATCCAACTTTGACTCCTATCCAGATGAGGAGTGGAAGAAGGACACACCGGTACCAGCGAAAGATCTGGAAATTTTTAAGAACTTCTAAAAGGAAAGTCATTTTCAATGCCTAAAAAGACAGGACTGTTAAAAGACAAAGGCTCAGAGCTGACATTTAAAGCATTCAGGGGACATTTAATGGTTCTAGTTGcattattatatgcatgttcTTCCTGTCGGTCCCTGAGTTCTGCACACTTGAGAAACCAACAGACTTCTTGTGATCACtattatcataattatcatcATAAAAGAAAATGAGGAAACTGTCTATCACTTCAGCATTATTCAGCACAGCCTGGGTCTCTTTATATTATGCAAATCTAaagtttttaaacatcattttatatTAGTAATATCAAAGGTTCCTTTTGCTGGATCAAGATGAGGTCTTCACTTAGACCTGAACATGTAtggtctttttgttgttgttgttgtgatctAGATAACTTTATAATTGGAAAAGCTTGCTCTATCAGAGCTTTAAGCTTGGGAAATATTATTTTCTGATCATCTGAACTCGCAGTGTTGATGTTTTCATCCTACATGGTATATATATGACACTTGTGCCTGTTTCACACTGCACGCTTGATTAGACGCAACTCTGTGCTTTTTACACTGGCAGCACTACTGTTACTATtattagtgttttatttaataacagcCATGCCTTTTTTTACAATTATcaaagtaaaatatttcagattgagGTGGGACATATTCAAATATCTACAACAGatgcaaaataacaaataaactgcAAGTCTGTAAATCAtctactttaacttttttttattttcataataggTGAATAGTTcattctagggctgcacaatatattgtttcctAATCAATAATGTAACGTGTAAATCTGTTATAtatagttacagtgcatgtccatttacatttataattaagcGCAAAGCACAGTTCATAACACATGTGATTTGTGAAGTTTAACGCTTAAAGAGTAAGATCTGCATTTGGACGTGTTTTGAATTTTTGGAGCACACGTTGTTTGAGTTCACGTTTGTAACTTGTAAAGTATTCATACAAGTGCTATTTTTGATTAATCAATTTATGTGAATACTTTTTCAACagaaaagttttaaaactttaCCTAAAGCATAAAGCTGTATttcgtttttattgttgttgttttgtattgGTCTGCGCTTGTAATTAGTTTATTTTGGTTTATACAGATGCACTCCAATGTGAAATCATCCCAGTCAGAATAAAATTTGAAATTATTTCATAATAGAGTTATTTAcgtcatcttgtgaaattatatataattatatatatcgcaatatacatatttaagagttcccacttagatatgcttagcgttaatagcaggtttggcatgctgggAAAGCACTCTGAGCTCATAATACTTAAGCTTTAAGGCACCCTACTGGTCATTAAGCATttaggggatccgagatcagttAGGTCTCGATATCTCCTcctcagaaaaaaaagagaaaaaggaggagatggggtggaaggtgggattcttccaaaatgaagatgaaGCAGTAGGAAAAAAATGATCCATTTGTTGTAAACTttgatcactctgattggattattactgaaaaCAGATGAACagccagtcgtgctcaatcatatcacatactcctctcaaaattagtttatgaaacttcactcatacattacataacaaaataacatttttgtttgattgtttttgtccccaatatcatgcagccctagatcACTCCAGTTTTGTGTGTAATCTGAGCCCATTTCtgtcacataaaaaaaaagaaaagaaaacagttatggaattttttttttttttttttgtcaggttttaatttatttaattatttttggtcATAATTGAGATAAATCTTAACAATTGGATTGTGACATTCATATAATTTCAGgaatttaataaagtaaatattgGAATATAATTTAATCTATTCTTTTTATAGTCTTTTTATGTGGCACTTTAAGGAATTTCATGGATGTGGGCACCATAATAAATGTGTGCAGTGTGAAACAGGCTAGTACACAcagaatgtttttgtgtgttgtgctttgctgcttttttattgattttctatGTAAACATGGTGTCTTTGACAGCTCTGCTGTGCCtcgtttctttctttttttcttgaacACCTCATTTTTTAAGACACggtcaacatttttaaaaaggtgttTCATGACACTGCCTTATTTTCATTCATCGACTTTACTTCAATTATACCATTGTGGCGTTTTGCATTTAGACCACAAAACCATGTTCTGTGTGAAAAGTCCCAAGATTCCAAAGAGCTTTTCAACACATTCCTGCCAGGAAGTCAGAATAAGAATACCAGGGAAAGTAGAGGTACAGTAGCACTTACCTAATCAAACTTGACCTCACAATCCTGTAGGTAACTCATAAATCAGCATTAACGCTTGTATTATCACATACTCATTGTTGGTCGTGCTTTACACCGTGCTTTATGTGTTCACTAATTGGTTAAGTGCTTAAgacttaaagaaaaaaatgctaGCCAGGTGTTTTCTAAAGTTGCCTTTCGTTGATATGGGGGTGAATTTAGCAAACACAGTTTACATTGCTTTGTACTGCTACTTCTTAATACATGTTTGCCCGATCGAAAGCCTTGCGTAATGGGAAGAGAACTGACTATGGTGTGAAATGCTTTAGAAATGTACTGTAGCTACTGAGTGTATGTTCGAAACAATtcctgtttctttcttctgtttttgtGTTAACTGTGCTGTCTTCTTAAGCAGTGATCTATCATCGTATTGTCTACTGAAAGTCATTTCTTGAAATGGCTATTCTTTTCAAAATTGCGGATGCAAATTTATACTAATGAAAGCGATTTGCAGATTTCATATGGACAGCTGTTACCATCGTGTGGGTTTAGTCTTTTTTTACGttactgtttttgttgttgaaccctgtgtgaaaaaaaaaatgttgtgctgTATTCTTAATTTTACTGTGTtctttttttacaattgtttGAAAGAAaagattgtattttatattgtttacaaCAGCAAAAAAGAGAGTTCTATGAACTTAAAAAAATTGACACAAACCCCAGCATAggattttatacttttatttttttcttattcagTAGTTTCCTTTTATTGCCTTCTGAACATTGATGGTGCATTTGAGATGGTACAAAGTGCAATGTTACCTGCAACTAAGCTGTTACGAAAACTTGAGAAAAGTCTGCAATATTCTATAtccatgaaaataaaacaaacttttcaTGTGGA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004691 cAMP-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-090313-408 Predicted to enable cAMP-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be part of cAMP-dependent protein kinase complex. Orthologous to human PRKX (protein kinase X-linked).

Ensembl:

ensembl_id ENSDART00000136761

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000651 lncRNA upstream 1199796 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 1205533 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 1206117 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000637 lncRNA upstream 1696939 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002848 lncRNA upstream 1858592 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00002850 lncRNA downstream 234113 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 413652 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00003084 lncRNA downstream 947914 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 948049 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 1166970 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00000662 mRNA upstream 424267 32791920 ~ 32793644 (+) True XLOC_000389
TCONS_00000658 mRNA upstream 523961 32521469 ~ 32693950 (+) False XLOC_000387
TCONS_00000659 mRNA upstream 524556 32521579 ~ 32693355 (+) False XLOC_000387
TCONS_00000660 mRNA upstream 526205 32528097 ~ 32691706 (+) True XLOC_000387
TCONS_00000655 mRNA upstream 832246 32341484 ~ 32385665 (+) False XLOC_000385
TCONS_00000666 mRNA downstream 38485 33322174 ~ 33324476 (+) False XLOC_000392
TCONS_00000667 mRNA downstream 38866 33322555 ~ 33334732 (+) False XLOC_000392
TCONS_00000668 mRNA downstream 45168 33328857 ~ 33332061 (+) True XLOC_000392
TCONS_00000669 mRNA downstream 99955 33383644 ~ 33487375 (+) False XLOC_000393
TCONS_00000670 mRNA downstream 100282 33383971 ~ 33485932 (+) False XLOC_000393
TCONS_00000663 other upstream 1193 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other upstream 1828 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000661 other upstream 511684 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000657 other upstream 703807 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000653 other upstream 1152881 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000675 other downstream 118169 33401858 ~ 33455232 (+) True XLOC_000393
TCONS_00000681 other downstream 399542 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000684 other downstream 451329 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000685 other downstream 683468 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000688 other downstream 839191 34122880 ~ 34122972 (+) True XLOC_000403

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_02997869_03042673.mRNA True 1526 mRNA 0.44 9 CI01000049 2997591 ~ 3042763 (+)
bowfin (Amia calva) AMCG00010872 True 4175 mRNA 0.51 13 CM030133.1 3034347 ~ 3044090 (-)