RNA id: XM_026938707.2


Basic Information

Item Value
RNA id XM_026938707.2
length 2445
RNA type mRNA
GC content 0.42
exon number 12
gene id tial1
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13366125 ~ 13374858 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGATCCTTTGCGCATGCGCATTGAGTGAAGTCCTGGCTGGCCGGGTTTCGCCATTTTCTACACAATAAGCAAAGTAACTAGCATTAACAGTTTGGTGTTCTTTTACATAAGCTATAACGACAGGTGGGTTATCAATAAGTTACACTAAACTTTGTACGATATCTGAGAATGGAAGACGAGAGCCACCCGAAAACCCTttaCGTGGGAAACCTGTCTAGGGATGTTACAGAGAACTTAATCCTTCAACTGTTCACCCAGATTGGTCCTtgtaaaagttgtaaaatgATAACAGAGCACACAAGCAATGACCCATATTGTTTTGTGGAGTTCTATGAGCACAGAGATGCTGCAGCTGCTCTAGCAGCGATGAACGGAAGGAAGATTCTAGGAAAGGAAGTCAAGGTGAATTGGGCAACAACTCCAAGCAGTCAGAAGAAAGACACATCCAatcatttccatgtttttgtGGGAGATCTGAGTCCTGAGATCACCACTGATGATATCAGAGCTGCATTTGCTCCCTTTGGGAAAATCTCGGATGCTCGTGTGGTGAAGGATATGACAACAGGGAAATCAAAGGGGTATGGATTTGTGTCCTTCTATAACAAACTGGATGCGGAGAATGCCATAGTACACATGGGCGGCCAGTGGTTAGGAGGACGGCAGATTCGGACCAACTGGGCCACTCGGAAGCCCCCAGCCCCTAAGAATACTCAAGACACCAGCCCAAAGCAGCTGAGATATGAAGATGTTGTGAACCAGTCAAGTCCTCAGAACTGCACTGTGTACTGTGGTGGCATCCAGTCAGGGCTCTCGGACCACCTTATGCGACAGACATTTTCACCTTTTGGGCAAATAATGGAAATAAGGGTTTTCCCAGAAAAGGGCTATTCTTTTATCAGGTTCTCTTCTCATGAAAGTGCTGCCCATGCCATTGTGTCAGTGAATGGAACAACCATTGAAGGCCATATTGTTAAGTGCTACTGGGGCAAAGAGTCACCTGATATGGCAAAAACTGTCCAGCCTGTCACAGAACAACAGGTGGATTATGGACAGTGGGGCCACTGGAATCAGATGTATGGAAATCCTCAGCAGTATGGCCAATACATGACAAATGGATGGCAAGTACCATCCTATGGAATGTATGGACAGACATGGAATCAGCAGGGATTTGGAGTGGAACAATCACAGTCTCCTGCCTGGGTGGGAGGCTTTGGGACTCAGCCCTCTCAGGCACAGCCTGGCCCTGTGATGAACCAGGCTAACTTTGGCATGGCTGGCTACCAGACACAGTGATTTGTTCATCATCACTGTCCAACATCTGAGTCACTTTGTGGGAACCCTCTTCCTCGTGTGAGGAGGGAATAAAGAGACTAATAGAAGTCATTGACTTTTTCCCGGAAAACATTCAGAACTGACCTGAATCAGGGTTTAAGTGCAAAGAAGCAAATTTTGATTATAGAACGCCTTCAGCAGGAAACTGAATTTATTTGCgaaatttattttcattgttttaatgGAGTCggacataataataaactgtacatTTCCCCCTCCATCTGTATTCAACAATATATTTGCTTATTGCCAATTACAGGAAGTGCACAGGTACATTGCAAAACGCTGTACATGATCTAAACACAATGCATTTTAAACTGTTTCATTTCTCCCCTTCCAAATAGCTGATGTGTTTGCTTGTTAGTCACACAATGGACTTCAAATTTTGTacctaaagaagcaaacaagcATTCTGACACAGTAAACACATGTAAGTAAAGGCACTTTTTGGGGTTCGTTGAACCTGTGTCTTGTAAATGTTGAAGTGTAAATGAATTTCTATGTGCAGTTGTGTATATTTAATTCACATTAGCTCCTCATTTCTCTCAGAATTCTAGAGTTTGATACAGCGTGTATGATGTTATCTTTTTACTATGTTTTACCGACAGTGAAAGCTCGTTCACTTTAAAGAAAGGGTCACTCTGTCTGATTATGTAAATAACCTTTGATAACTGGGTATGGAAAAGGGTTTTCTGTGCATCCCTTCTTTATTTCTGGATAGAGCAGAAACTGCACTGCTCTTGATAGACACACGTCCGTGTGGCTGACATGCTGAATTCACTCAGTGTTACAAAGAAGCCTTAATTTTCAGTCACTCAGTTTTACTGATCTGAGACCCTTGTAGAGAGCTGTATTGTTGACTTTAGTCCCTAAAGTAGATTTTCTCCATTTGCAGTTTTGCGTGCCATTTTCTCTAGTAGCCAGACAAATGAGATTTGGGGATTTTTTGGGGGGGACTTTGTAGATTTGAAATGCATGTTTCAAATCACATTTGTTGAGGTTGCTTCAGGAACCGAATGTAATAGGTAAAATGTTTGAATGCAGTCTAGCATTTGATAATTTTAAGTCTAAATGAGTCTCAATAAATGAACCATTGGACTAGGAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53934 lncRNA downstream 52969 13312950 ~ 13313156 (-) True G45622
TU53928 lncRNA downstream 55885 13308094 ~ 13310240 (-) True G45616
TU53880 lncRNA downstream 115748 13248942 ~ 13250377 (-) True G45586
TU53680 lncRNA downstream 459650 12906274 ~ 12906475 (-) True G45422
TU53642 lncRNA downstream 497669 12866108 ~ 12868456 (-) True G45395
TU54091 lncRNA upstream 55508 13430365 ~ 13430899 (-) False csgalnact2
TU54100 lncRNA upstream 89639 13464496 ~ 13464739 (-) True G45755
XR_003404420.2 lncRNA upstream 257898 13632755 ~ 13641524 (-) True LOC113543535
TU54560 lncRNA upstream 808911 14183768 ~ 14184086 (-) True G46183
TU54707 lncRNA upstream 914699 14289556 ~ 14291633 (-) True G46304
XM_026941768.2 mRNA downstream 42436 13318232 ~ 13323689 (-) True itprip
XM_026942078.2 mRNA downstream 73926 13288107 ~ 13292199 (-) True plaua
XM_026934678.2 mRNA downstream 86348 13237216 ~ 13279777 (-) False vcla
XM_026932642.2 mRNA upstream 30411 13405268 ~ 13417671 (-) False mcmbp
XM_026932634.2 mRNA upstream 30411 13405268 ~ 13417671 (-) True mcmbp
XM_026939115.2 mRNA upstream 55140 13429997 ~ 13435486 (-) False csgalnact2
XM_034302797.1 mRNA upstream 55140 13429997 ~ 13435244 (-) True csgalnact2
XM_026932451.2 mRNA upstream 62279 13437136 ~ 13459577 (-) False ret
XR_004577863.1 other downstream 334929 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 631843 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 697234 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 697560 12668493 ~ 12668565 (-) True trnak-cuu_2
trnak-cuu_1 other downstream 726523 12639530 ~ 12639602 (-) True trnak-cuu_1
XR_004577668.1 other upstream 807034 14181891 ~ 14192243 (-) True ccdc85a
TU55100 other upstream 1405008 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 2039084 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 3604274 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 3604274 16979131 ~ 16982729 (-) False morn4

Expression Profile