RNA id: TU241543


Basic Information

Item Value
RNA id TU241543
length 206
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G203935
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2008401 ~ 2008606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctttgttgcttgctaCTGTCAATGAAATCCATGTTGCGCATATACATAAAACATGAATGTTAATCTGTCACTTTTGTAGTATGTCTACACCAAGCTTTATCTCAGCCTCATGAATCATACAAtactaatgttaatgttaatatcaaTTCCTACATTTATACTTTTAAGTGATTTAGGGATTTCCCCTGACTAAAATATGAACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241516 lncRNA upstream 21186 1919023 ~ 1987215 (+) True G203913
TU241496 lncRNA upstream 67631 1917205 ~ 1940770 (+) False ppfia3
TU241508 lncRNA upstream 85922 1905839 ~ 1922479 (+) True G203906
TU241499 lncRNA upstream 136841 1856423 ~ 1871560 (+) True G203898
TU241459 lncRNA upstream 141390 1772629 ~ 1867011 (+) False G203867
TU241566 lncRNA downstream 145830 2154436 ~ 2159283 (+) True G203955
TU241570 lncRNA downstream 174631 2183237 ~ 2186164 (+) False rundc1
TU241577 lncRNA downstream 189507 2198113 ~ 2198333 (+) True G203965
TU241588 lncRNA downstream 215943 2224549 ~ 2227164 (+) True G203973
TU241581 lncRNA downstream 249876 2258482 ~ 2260374 (+) True G203967
XM_034310208.1 mRNA upstream 20486 1933474 ~ 1987915 (+) False ppfia3
XM_034310209.1 mRNA upstream 20486 1933760 ~ 1987915 (+) False ppfia3
XM_034310210.1 mRNA upstream 20486 1933850 ~ 1987915 (+) True ppfia3
XM_034310211.1 mRNA upstream 20486 1934573 ~ 1987915 (+) False ppfia3
XM_034310212.1 mRNA upstream 31517 1933474 ~ 1976884 (+) False ppfia3
XM_034310160.1 mRNA downstream 3627 2012233 ~ 2061070 (+) True slc1a9
XM_026916139.2 mRNA downstream 75946 2084552 ~ 2091453 (+) True hsd17b14
XM_034310053.1 mRNA downstream 83953 2092559 ~ 2114069 (+) False bcat2
XM_034310052.1 mRNA downstream 85771 2094377 ~ 2114069 (+) True bcat2
XM_034310161.1 mRNA downstream 121922 2130528 ~ 2174611 (+) True grna
TU241504 other upstream 122923 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 417326 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 652074 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 771789 1220512 ~ 1236612 (+) False paqr4a
TU240783 other upstream 957262 1046805 ~ 1051139 (+) False armc5
XR_004579364.1 other downstream 146993 2155599 ~ 2155849 (+) True LOC117598829
TU242114 other downstream 995066 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 1184106 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1958152 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1958152 3966758 ~ 3986284 (+) False limd2

Expression Profile