Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579364.1 |
| length | 141 |
| RNA type | ncRNA |
| GC content | 0.53 |
| exon number | 2 |
| gene id | LOC117598829 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 2155599 ~ 2155849 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0001889 | liver development | biological_process |
| GO:0048675 | axon extension | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU241543 | lncRNA | upstream | 146993 | 2008401 ~ 2008606 (+) | True | G203935 |
| TU241516 | lncRNA | upstream | 168384 | 1919023 ~ 1987215 (+) | True | G203913 |
| TU241496 | lncRNA | upstream | 214829 | 1917205 ~ 1940770 (+) | False | ppfia3 |
| TU241508 | lncRNA | upstream | 233120 | 1905839 ~ 1922479 (+) | True | G203906 |
| TU241499 | lncRNA | upstream | 284039 | 1856423 ~ 1871560 (+) | True | G203898 |
| TU241570 | lncRNA | downstream | 27388 | 2183237 ~ 2186164 (+) | False | rundc1 |
| TU241577 | lncRNA | downstream | 42264 | 2198113 ~ 2198333 (+) | True | G203965 |
| TU241588 | lncRNA | downstream | 68700 | 2224549 ~ 2227164 (+) | True | G203973 |
| TU241581 | lncRNA | downstream | 102633 | 2258482 ~ 2260374 (+) | True | G203967 |
| TU241612 | lncRNA | downstream | 233135 | 2388984 ~ 2392499 (+) | True | G203996 |
| XM_034310053.1 | mRNA | upstream | 41530 | 2092559 ~ 2114069 (+) | False | bcat2 |
| XM_034310052.1 | mRNA | upstream | 41530 | 2094377 ~ 2114069 (+) | True | bcat2 |
| XM_026916139.2 | mRNA | upstream | 64146 | 2084552 ~ 2091453 (+) | True | hsd17b14 |
| XM_034310160.1 | mRNA | upstream | 94529 | 2012233 ~ 2061070 (+) | True | slc1a9 |
| XM_034310208.1 | mRNA | upstream | 167684 | 1933474 ~ 1987915 (+) | False | ppfia3 |
| XM_026917227.2 | mRNA | downstream | 21834 | 2177683 ~ 2184590 (+) | True | rundc1 |
| XM_026917270.2 | mRNA | downstream | 31516 | 2187365 ~ 2195026 (+) | True | rpl27 |
| XM_026917021.2 | mRNA | downstream | 42900 | 2198749 ~ 2212411 (+) | True | slc25a39 |
| XM_034309962.1 | mRNA | downstream | 83760 | 2239609 ~ 2258256 (+) | True | nbr1b |
| XM_034309964.1 | mRNA | downstream | 83760 | 2239609 ~ 2258256 (+) | False | nbr1b |
| TU241504 | other | upstream | 270121 | 1883075 ~ 1885478 (+) | False | ccndx |
| TU241220 | other | upstream | 564524 | 1561594 ~ 1591075 (+) | False | syt3 |
| TU241205 | other | upstream | 799272 | 1353334 ~ 1356327 (+) | False | kmt5c |
| TU240880 | other | upstream | 918987 | 1220512 ~ 1236612 (+) | False | paqr4a |
| TU240783 | other | upstream | 1104460 | 1046805 ~ 1051139 (+) | False | armc5 |
| TU242114 | other | downstream | 847823 | 3003672 ~ 3012859 (+) | False | pyya |
| TU242330 | other | downstream | 1036863 | 3192712 ~ 3200133 (+) | False | LOC113527909 |
| TU242670 | other | downstream | 1810909 | 3966758 ~ 3986284 (+) | True | limd2 |
| TU242671 | other | downstream | 1810909 | 3966758 ~ 3986284 (+) | False | limd2 |
| TU242672 | other | downstream | 1810909 | 3966758 ~ 3986284 (+) | False | limd2 |
