RNA id: XM_026917021.2


Basic Information

Item Value
RNA id XM_026917021.2
length 2822
RNA type mRNA
GC content 0.47
exon number 13
gene id slc25a39
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2198749 ~ 2212411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCTTCCGGCCTGCAGGGGGCGCAGTGAGGCTGCTGCAGTGTGAGAACACTGTGTACTTCCGAGGATCTGgcagataaacagaaataaacggTGTGAAATGGAGGGACTGAAACAACCACCGCTTTCTTTTTTCCAGCTGGAGAGGCAGGAGGATCTAAAACCCTGAGCAAGCTCCATGTGGGAGAGGATTAAAGCCATGATCATCTGCTGAGGCTCTGAAAGgtggacAGGATGGCTGAGGGTCCTGCAGGTGGTCCGTCTCCCTCCATCACTCCAGTGCAGCAGATGGTGGCGTCCAGTGCCGGAGCGTTACTGACCGCCCTCTTcgTAACACCGTTAGATGTGGTGAAGATCAGATTGCAGTCCCAGCAGGCTCCAGTCTACAAAGctTTACCAGTGGAGTCTCGTGTGTGGAAGAGAAAATCTCATCTCCCGAAGTGGAAGTGTTTCCTCTACTGTAATGGACTGATGGATCACATCTACGTCTGCCAGAACACGACGGCCTGCAGCGCCTGGTACAAAACACCCACTCAATTCAGTGGGACCCTGGATGCGTTTGTGAAAATCACTCGCTCTGAAGGGCTGCGCTCTCTGTGGAGTGGCCTTCCTCCTACACTtgtgatgGCGGTTCCCACCACAGTCATCTACTTCACCTGCTATGACCAGCTCAAGGACTTCCTGTGTTATGGCCTTGGTTACCACAGCAACCACGTATCTGTCATTGCCGGGGGTCTGGCGAGACtggGCGCGGTCACAGTGATCACCCCGTTGGAGTTGGTGCGCACTAAGATGCAGTCACGGCGTGTGTCGTACAGTGAGCTGCGAGTGTGTATCAGATCGGCCGTGGCTCAGAGCGGAGTGCTCTCGCTGTGGAGGGGGTGGGGACCCACTGTGCTCAGAGACGTCCCCTTCTCTGcCATGTACTGGTTTAACTATGAGCTGATGAAAGCAGAGCTGTGTGAGAGATACAGAACACCCCAGGCTTCTTTCACCATCAGCTTCACTGCAGGAGCCATTTCTGGAGCTATCGCTGCGATCACGACGCTGCCGTTCGACGTGGTGAAAACACGCAGGCAGATCGAGCTGGGAGAAATGGAGATTCTCGGAGCTCCTCTGAAGAAGCCTTCTTCCACATGGCTCACAATGAAGAGTATCTGGAATGAAACCGGCTACCGAGGCCTGTTTGCTGGTTTCCTGCCGCGGGTGATTAAAGTGGCTCCGGCGTGCGCCATCATGATCAGCACGTACGAGTTCGGGAAGGCTTTCTTCCGCAAGCACAACGAGGAGCAGCGAGGTGGCTGAGACGTGCGGAGCATCACCGCCGAGCTGCATGATCATTTTCACCCAAACTGACCTGCCTTTAGCTCGGCCTTGGCATGCGTCCTGTTCTTATCTCCACAGGTTCTGGGCAGCAGGGCTGAGGCTCTCGGGTTCAGTTCAGTAACGCTGTGcatgagttatttatttatttatttccctgaGACGAGATTTACTGCATTGCAGTAAGACTGCAGGACACTGGAACCTCACCAAGGCATGCTGGGAAAACCGCTATCCCCGCATTTATCTGCACGCATGGGTACTCTGAGGGAATATTATTCAGCCGATGAATTAATGTGGGTTGTGAAATGGTTCCTGGTTCCATGTGGTCTTCATGTATGTCATATGATGCCAGTCAAGTCTGAAATAGCAGATGAGTAGACAGTGTTCATACACTGCCCCCTGGTGTTTATACACTGCAACTACAGCAGAGATTAATCAGAATCGCATCGGGTTTATGGAGAAATATGGTTGAATATTGAAGCACAATGTGCCCTCATCGATTCCCCCTAATGATTTAGAAGTGCACATCTGTTAGGTCACACCTAAAGCACAGCTGGATCATTTCCGCTGTCCTGTGAACGGAAAAAACATCTAAATTTAGAATGTTACACAACAGCATCTGTTtgagaaaaacacatttgctATAATTTGTCCATTATTGCTTCTCCATAcatttataaagttataaataacTTTATCTGATCGCACTGACTTCTGGGTAATTCCCATCCCTGAAGTCTGCATGGAGGTTGTCTTGATCCGTTATCCTGTGTTCTTGTGCATGTCTGACTTTAAAGGCACTCATTTCCTGCCCTGGAAATGTGTCAGTTCAGAAAGCTTTCTGGACAAGAAAATCAGGatgttctgtttttaaaataatatagatCCAAGACACTAACGTTCTAATCCTGTTGTCTTTAGAAATCTTTTTCTCAGCATTGAAACAGTGAAAAGTGTTAAAGAGCTTAGCAAGAAAATGGATCATAGACATAGACGTAGTCTTTAAAGATTCAGTAAATCGATCCGGATCTGTGTGAAAAGGTCAAAGCTTCACTTGAGCTGATGACGAGTTCAAAAGGCCCtaagcaaaatattaaaatcgCAGTGCCATTTAGCTTATTCCTACAGTGGATCTTCTGGTTTTTATACATCCTAGTAGCAGTGCTAATTTTCCTGATGAAACAATGAACCCTTTTACTTGAAATATATgataaaagtaaataacattttccTCACCAAGGAAATAATTTCTGCTTTTTATATTGCGTGTCTGTTATAATACTAGCTAGCCGGAACTAGCGTAAGTTACCTGATGACACTAACCAAAatcagtgaaatttattttacttttattaagtGTATGCAGCgaaataaatacactcacaaGGGTAATGTTGTTAAATAAACCTTTATGTAGTCCACGCACATCTGAGTAGGAGAAAGACTTTATCCTGTAATGTGCATTTAGAAAGCAAATAAATCAAGTACGACCCTCAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0006828 manganese ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016530 metallochaperone activity molecular_function

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241577 lncRNA upstream 416 2198113 ~ 2198333 (+) True G203965
TU241570 lncRNA upstream 12585 2183237 ~ 2186164 (+) False rundc1
TU241566 lncRNA upstream 39466 2154436 ~ 2159283 (+) True G203955
TU241543 lncRNA upstream 190143 2008401 ~ 2008606 (+) True G203935
TU241516 lncRNA upstream 211534 1919023 ~ 1987215 (+) True G203913
TU241588 lncRNA downstream 12138 2224549 ~ 2227164 (+) True G203973
TU241581 lncRNA downstream 46071 2258482 ~ 2260374 (+) True G203967
TU241612 lncRNA downstream 176573 2388984 ~ 2392499 (+) True G203996
XR_004579376.1 lncRNA downstream 311577 2523988 ~ 2524878 (+) True LOC117598836
TU241988 lncRNA downstream 328703 2541114 ~ 2541458 (+) True G204316
XM_026917270.2 mRNA upstream 3723 2187365 ~ 2195026 (+) True rpl27
XM_026917227.2 mRNA upstream 14159 2177683 ~ 2184590 (+) True rundc1
XM_034310161.1 mRNA upstream 24138 2130528 ~ 2174611 (+) True grna
XM_034310053.1 mRNA upstream 84680 2092559 ~ 2114069 (+) False bcat2
XM_034310052.1 mRNA upstream 84680 2094377 ~ 2114069 (+) True bcat2
XM_034309962.1 mRNA downstream 27198 2239609 ~ 2258256 (+) True nbr1b
XM_034309964.1 mRNA downstream 27198 2239609 ~ 2258256 (+) False nbr1b
XM_034309963.1 mRNA downstream 27199 2239610 ~ 2258256 (+) False nbr1b
XM_034310177.1 mRNA downstream 409759 2622170 ~ 2691714 (+) True LOC117598986
XM_026916953.2 mRNA downstream 642985 2855396 ~ 2856253 (+) True hspb9
XR_004579364.1 other upstream 42900 2155599 ~ 2155849 (+) True LOC117598829
TU241504 other upstream 313271 1883075 ~ 1885478 (+) False ccndx
TU241220 other upstream 607674 1561594 ~ 1591075 (+) False syt3
TU241205 other upstream 842422 1353334 ~ 1356327 (+) False kmt5c
TU240880 other upstream 962137 1220512 ~ 1236612 (+) False paqr4a
TU242114 other downstream 791261 3003672 ~ 3012859 (+) False pyya
TU242330 other downstream 980301 3192712 ~ 3200133 (+) False LOC113527909
TU242670 other downstream 1754347 3966758 ~ 3986284 (+) True limd2
TU242671 other downstream 1754347 3966758 ~ 3986284 (+) False limd2
TU242672 other downstream 1754347 3966758 ~ 3986284 (+) False limd2

Expression Profile