RNA id: XM_026914317.2


Basic Information

Item Value
RNA id XM_026914317.2
length 2528
RNA type mRNA
GC content 0.47
exon number 18
gene id zgc:111976
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 7810355 ~ 7822642 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTCAGCTTACACGTGAGAAAGTTTGGCAAATGTCTGCCTCCATCTTCATGCCACTAAcatcagtatttcagaaaaacaaagcagaataaaataaaacgtcCAATTTGCAGCAGaaatcagattattattttggattttgttgATATCGTCGCCAATGCAAAAGAACTTCAGGATCTGAAGAAGTGGACAAACAAAGCAAGAAAACGTGTTAATGTTTAACTTCTGTTAGCCATAAAGGAAATCTGACACTTGAATGTCCAAAACAATGTTCATATAAATGAAAACAGTGGCATTAGATTCATAATCTACTATTAAAGAGCTGATATTACACAGCTGTGGTGTTAGTGCCGATTCATTCAGCACTGCACCTGAAGTTCATTGAGTGTGTGGAACCGACTCTTTGAATCGACTCCATTGATTCCCGACGCTTGGGATAGGAAGCGGAGTCGACTCCAAAGTTCCTGGATTCGAACAGGAAGCAGCGACGCTGTAGAGACAAGCGTGGAGACGCGCTGGTAGGATGCTTCTGCGCATGCGTAAATAGGCTTGCACATAAGCCATGCTTTTAAATGTTGGAAGAAGAAAGCAGAAACCAGAAACAGCTGAGATGGACTCAAAAGTGGATGTCCTGAAGACGACCTATTTATCTGGATTAAGGTCCAAATATGCAGAAAAACCATGGAGTGAGACCTTTCAGCTGGTGCACAGATGCATGGAGAAATCTAGAACAGACATTATGCACTGTGGGCCAATCACGAGATGCCTGCAGAAACTCCAGGAAGCTCAGAATGTGACCTCTCTGAGTGCCATGGTGACGAGACTGGAGATGATTGCCAAACAGAGAGGACTGGGCTCCCACTTGAGTCCCACAGAGACTGCGTGCTATCTGACAGCTGATCTGTTCTATGTGGAGGTGCTGCTGCTGCCTGGGGGAGAGGTTGAGGATGTGAAAGTCGCTCAGCATGGAGCAGCTCCTGAGtcaAATGCATCACTTTGTCAGCTGCTAAGGATGAAGAAATTTAAGGAATTCTCACTCAAGCTGGATGACCTTGCTTCTCTCTACAACATACCAGGCGACGGTGATACCAAGCTAAAGGTGTACACATCCCTTCAGCATCTGCAGAAAGACCTATTGAAGATCTCCAATTTACCAAGAATTGGAAGTGTTACACCTAGCAGAGAAGGAAGCCCAATGAGCATTGAGTACTACATCAGCCCCTCAGATGCTCTGATGGAGCGGTTACATCCAGGGGAGGGCAGCCGTAGCCAGACGGCCCTGGTGGTGGTGGGTGTCAGTGCCGCTACACACAGGTTACAGATGGAGTCTCTGATTCCCACACCACCTCAAGTGGACTCGCTAGGGCTTCCTGCTTTCATCCCGCTGTCTGAAAAATGCTCCGAGTCCATGCCAGCCTTGTTCCTTCTCAAAATCAAGCCGCCAGTGCCCATGCTCAACACCTTCATCCACAAGATGAGCCAGATAACAGACATTCCCCCAGATGCTGACCTGAAGGGGGAGCCACTTTTCCAGTTGCTCCAGTCGGCTGTTCTAGAGGACGAGAGATCATGTGATGGAAAAGATGCTCACTTTCTTGTATCTCTGCCAGATGCTGAGTTTCACAGCTATTTGATCGCTGATGCTGAGTGGAAGTGTGACATCTGGAAAGGATCCCTAATTCACACAGTTCCTTTCACCCATCCTGCCCACGTGCCTGCCTTGTTGGACCTTCTCCGGTATCAGTCTGCCATTAACACCCTACTGGCGAGCTGCATCACCAGTCTTAAGCACCAGCCAGAGTTAGCATGTGACCTTAGTGGTGAAATCTTACCCGAGTCTGACTGCAGCTTTTCTGTGACCTTCAGCGTCCCGGACAGCGACACATTGGCAGTTTTGCTTGTTTCTGTGGTGGATTGTCGTCAGCTGCGCTGCAAGCTGCTAATGCCTGGTACAGTGGATCACTCTCTAGATGACTATATCTCCAGAGTCCTCACACGGTGCATGTCTATCCCCATCACTTTGAGAGCTTTACGGAAGAGGATATCCAGCTTGAGGGCTCCAGAACTGCCACTTGAACCTGATTCTTCTAGGAAAGCCGAGAGTTCATCCTCTACACCGGCACATTGTGCTGTAGAAAACACTCCAGCAGTCCTCCCTTCTGCCGTGCTCTCCCCTGAGCCCATGGGGGAGGACGATCTTCCCTCTAACCCCGGCCACTATGTCATGTCTGTAGCTGCTGCTCCGGCAGTTGATGGTGCTAATACAGATGCGATTGCTAACCCTTCGCCCTGTGCCTCTGTGGGTGTTTATTCACACTGGGTGGCCAGCAGCTTTCCAGCTGAGCTGATTTAGAGTAGTGGAAAGGATGATCATGCCTGAGAGATATGTagtaaattatttgttttgaagaaagtcattaataaagatattttaaatggAAGATGTCACATAATCTGGAATTTTCCCAGAGAGCTAGagatatttttttgtatctaaacacattttttcagcAATACATAGCATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4959 lncRNA downstream 41507 7768639 ~ 7768848 (-) True G4200
TU4844 lncRNA downstream 202163 7607455 ~ 7608192 (-) True G4100
XR_004579108.1 lncRNA downstream 282118 7516789 ~ 7528237 (-) True LOC117598440
TU4704 lncRNA downstream 416969 7393122 ~ 7393386 (-) True G3979
TU4644 lncRNA downstream 521919 7288195 ~ 7288436 (-) True G3926
TU5030 lncRNA upstream 85 7822727 ~ 7823011 (-) True G4270
TU5033 lncRNA upstream 4206 7826848 ~ 7827128 (-) True G4273
TU5034 lncRNA upstream 5874 7828516 ~ 7828845 (-) True G4274
TU5011 lncRNA upstream 9434 7832076 ~ 7836027 (-) True G4251
TU5339 lncRNA upstream 80670 7903312 ~ 7903540 (-) True G4517
XM_026913505.2 mRNA downstream 6489 7770659 ~ 7803866 (-) True si:dkey-192l18.9
XM_026913995.2 mRNA downstream 43590 7758384 ~ 7766765 (-) True napga
XM_034305696.1 mRNA downstream 781962 6982165 ~ 7028393 (-) True vopp1
XM_034306160.1 mRNA downstream 1323745 6393785 ~ 6486610 (-) True scospondin
XM_026913593.2 mRNA downstream 1418966 6184134 ~ 6391389 (-) True kcnh2b
XM_026913772.2 mRNA upstream 32327 7854969 ~ 7897912 (-) False itgb1a
XM_026913769.2 mRNA upstream 32398 7855040 ~ 7897912 (-) True itgb1a
XM_026914150.2 mRNA upstream 83153 7905795 ~ 7921928 (-) False fxyd6l
XM_026914149.2 mRNA upstream 83153 7905795 ~ 7921924 (-) False fxyd6l
XM_026914151.2 mRNA upstream 83596 7906238 ~ 7921926 (-) True fxyd6l
trnae-cuc_2 other downstream 252535 7557749 ~ 7557820 (-) True trnae-cuc_2
TU4104 other downstream 1419647 6271436 ~ 6390708 (-) False kcnh2b
TU4064 other downstream 1724699 6069359 ~ 6085656 (-) True G3420
XR_003402769.2 other downstream 2823645 4983218 ~ 4986710 (-) False LOC113526375
TU3260 other downstream 2905148 4900886 ~ 4905207 (-) True G2709
XR_004578678.1 other upstream 85690 7908332 ~ 7921917 (-) False fxyd6l
TU5508 other upstream 501940 8324582 ~ 8367964 (-) True G4658
TU5903 other upstream 1195765 9018407 ~ 9112988 (-) True G4948
trnap-cgg other upstream 1902608 9725250 ~ 9725321 (-) True trnap-cgg
TU6348 other upstream 2042388 9865030 ~ 9866516 (-) True G5325

Expression Profile