RNA id: XM_026920023.2


Basic Information

Item Value
RNA id XM_026920023.2
length 1328
RNA type mRNA
GC content 0.47
exon number 9
gene id rsph3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20868387 ~ 20879064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCCTTAGTTACTGTTGCTAGGGCAACTTTCATAAATAGTAACAGACGTTCCTCGCGTCTTGGCACTCGGCGGCTTCTCGGGTTTATCTGCTTCTTTTCACCATCTAATACAGTTTCTTCTTATGTTATTAGAATGACCTCGGTGTTACAGCCTAAAAGAGGGCCTCCGGATGGATCTTACACGTATTCCAGTCGTCCACATGCCGCCCCCAGCCGCCTCAGACACACGGAGCCCGCGGTGATGGAAAATGAAGGGCGACCAGTCTATGGAAACATCATGTATGATCGACGTGTCGTTAGAGGAAATACCTATGCACAACACATCCTGCCAGTCacgGCTCAGCCTGACCCAGTCGAGATCCAGTGGCAGCAAGAGGCAATGCGACGAGCCACAGCAAGAAAGGGGGCAAAAGACAAGTTTCAGACAAGAAGTTCAGGCACACTTGAGGAGAGAAAGCACATAGATGTTCAGACTGAATTATACTTGGAGGAGCTGAGTGATCATATTGAGGATGCCAGTGTGGAATGCCAGACAGATGCATTTCTGGACAAGCCAGCCACACCTCTCTTTATCCCTGCCAAATCTGGCAAAGATGCAGCGACACAGATAGAAGAAGGAGAGCTGTTTCACTTTGATCTGGAGGTGCAGCCAGTGTTGCAGGTGTTGGTAGGAAAGACCATGGAGCAGGCTTTGCTGGAAGTActggaggaggaagagctgGCTGGGTTGAGGGCTCAACAGTGTGCTTTCCAGGAGTTGCGTAATGCTGAATTGGTGGAAGTTCAACGACTGGAGGAGCAGGAGAGCCGACACAGAGAGGAGAAGGACCGGAGGATTAAGCAGCAAAGGTTGATCttgaagaaggaaagagaaacgGCAGAGAAAATCGCTGCTAGAACATTCACTCAACATTATCTTGCTGACCTTCTTCCTTCAGTCTATGCTAATCTGAGAGACCATGGATACTTCTATGACCCAGTGCAGAGAGATATAGAGACTGGATTCCTTCCCTGGCTGATGGCAGAAGTCAACAATACTTTGGAAAAGCATGATGTTGCACGAACAGTGCTTGACATGCTCATCCAAGATGTGACCAACCAGAGACAGGAAGTCTTTCAGTGTGTGAGCTGCAAATGATGGTTTCTTCTGTTGGACTGGAGAACCTTTTgcagacacaaggagaacatatgaaactcaGAGAGCATAGACAAACAGTTTCGAAcctggactctggagctgtggaAGCAATAATTGTTGCTGCaacttttaaaacattaagaaaCCTTTAAGTCTGCTTATCCAAGCATAATATAAGTGTATGATTCT

Function

GO: NA

KEGG:

id description
K23965 RSPH3; radial spoke head protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219311 lncRNA downstream 208730 20659092 ~ 20659657 (-) True G185304
TU219112 lncRNA downstream 437888 20430275 ~ 20430499 (-) True G185151
TU219105 lncRNA downstream 506814 20357176 ~ 20361573 (-) True G185145
TU219099 lncRNA downstream 551115 20303541 ~ 20317272 (-) True G185139
TU219098 lncRNA downstream 584125 20283695 ~ 20284262 (-) True G185138
TU219678 lncRNA upstream 44356 20923420 ~ 20929878 (-) False mob3c
TU219684 lncRNA upstream 67871 20946935 ~ 20967320 (-) True G185596
TU219720 lncRNA upstream 197265 21076329 ~ 21339757 (-) False G185624
TU219714 lncRNA upstream 199621 21078685 ~ 21084703 (-) False G185624
TU219715 lncRNA upstream 199621 21078685 ~ 21084703 (-) False G185624
XM_034308494.1 mRNA downstream 2462 20843323 ~ 20865925 (-) True abcb11b
XM_034308911.1 mRNA downstream 71723 20787148 ~ 20796664 (-) True il12rb1
XM_026927301.2 mRNA downstream 86448 20765048 ~ 20781939 (-) True homer3b
XM_026947945.2 mRNA downstream 103647 20756664 ~ 20764740 (-) True LOC113547474
XM_034308715.1 mRNA downstream 113691 20747155 ~ 20754696 (-) False arrdc2
XM_026923564.2 mRNA upstream 12779 20891843 ~ 20896484 (-) True atp5f1b
XM_034308492.1 mRNA upstream 29780 20908844 ~ 20921412 (-) False mknk1
XM_026919381.2 mRNA upstream 29780 20908844 ~ 20921411 (-) True mknk1
XM_026919394.2 mRNA upstream 44231 20923295 ~ 20929955 (-) True mob3c
XM_026912400.2 mRNA upstream 69130 20948194 ~ 20963442 (-) False zfyve9b
TU218625 other downstream 1155796 19706175 ~ 19712591 (-) False dda1
TU218611 other downstream 1170678 19695262 ~ 19697709 (-) True G184716
trnav-uac_6 other downstream 1552013 19316302 ~ 19316374 (-) False trnav-uac_6
trnai-uau_4 other downstream 1552300 19316015 ~ 19316087 (-) True trnai-uau_4
trnav-uac_5 other downstream 1553302 19315013 ~ 19315085 (-) True trnav-uac_5
TU219835 other upstream 411385 21290449 ~ 21324977 (-) True G185706
TU219847 other upstream 469945 21349009 ~ 21349850 (-) True G185718
TU220102 other upstream 1116122 21995186 ~ 21996027 (-) False LOC117598437
TU221107 other upstream 2786479 23665543 ~ 23668670 (-) False ptprc
TU221212 other upstream 2939338 23818402 ~ 23827901 (-) False c11h1orf53

Expression Profile