arrdc2 (arrdc2,LOC107656095,LOC107692233,LOC107753823,LOC107723859)


Basic Information

Item Value
gene id arrdc2
gene name arrdc2,LOC107656095,LOC107692233,LOC107753823,LOC107723859
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20747155 ~ 20754711 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919474.2
cacagccacgctccaaaatctagtggaaagccttcccagaagaagcAGCAAAGGGAGGACTAAATCGTACATGCACATACGAGCGTGCCGGTGAGGTGTTGACATActttttggctgtatagtgtttGTCATGTTGTGGAAGAATAATGCGTTTCTTTAACAGATTGTTCTTGTGAAGAGATTCTGTAGTAAACACAGGAAAAAGCTTGACTTTGATCACTTTTAACCAAAGAGAATTATTCTTTATTTGGGACTGGTAATGATGGTGACTTTTCTTTCTGCATTCTGGTTTGTAACCACCAGAGGGAGCCAGAGATACACGGGAAGCCCATAGCACAGGCGCAGAGGCAACGAGGAAGCCAgatttactttacttttctgTGCACAGAGAGTGGAGATGGCgataagaacttttttttttaataaacatctctgtCTTGTTCTTGCTTGTCGACTGGTACCTCTGTGTTTAAACACTAAATACTCATACTGAAACCCTTTCATCGACGACACGAGAATGCACATATTTGCCTCATTCATTTCAGGGTGTTATGTGTTTTATATGAGTTTTATATGAGACATCATCAGAAAGTTTTATAGATGTACGTGTTACTAGTGCTCCAGTTTACCTCCAACTCTTAAGCAACATTTGACTTTATTTCGACGTCAGGtctaatttacatgaaacaGTTGTGTACACTGTGTCTcggtgtgttttgttttgaatggCTGCTTTCGGGCATGCTCAGTCAGCTTGTTTTTCACCAAGAACCTGCAAGCATCAATCATCGAGCAGCGTCTGCCCCCGCGCGCTCTCCACACCCAGTGATGTTTATTAGGCGCAGCCAATCATCACTCCGAACCGCGCATAATTATGACGATTTCCCCGCCCCCTTCCCTGCCTCCTAGTTAAAGGACCTATTGAGCTATGAAgcttttcagttttgttttgaaTCGAATGAGAAGCATCGCTACTAAGGCACTTTAACAACTTATCCCGGATAGAGTTTGGagccttttttctttcccctgcATCACCCCTGAAGATGATTTTCGACAAGGTGAAAAAGTTTCAAGTCGTCTTCGACTCTCCTGATGTAGACTCTCCGCCTGTGTTCAGCAGTGGAGATGTGGTGTCTGGTCGAGTCGTGCTCGAGCTCTGTGCACAAACCCAAGTGCACTCGGTAAAGCTGCATGCTGAAGGTTATGCGAAAGTTCACTGGACTGAGTCTCGGAGTGCAGGATCCAGCACGGCTTACACGCAGAACTACAGCGACGAGGTGGAATATCTGAACCGCAGAGAAGTGCTGCTGCAGGCAGATAATGGAGAGCTGACAACCCTTCCTGCTGGAAGACATGAATACCCCTTCAGCTTCCAGCTTCCCGAAGAgACACTGGTGACTTCCTTTGAAGGCAAGCATGGCAGCATTCGCTACTGGGTCAAGGTGAAGTTGCACCGGCCGTGGGCCCTGGTGAAGAAGATCAAGAAAGAGTTTACAGTTATCGAGCCCATTGACATCAACACACCGTCCCTACTTGCACCTCAGGCTGGAACCAAAGAGAAGATGGCTCGTGTCTGGTACCACAACTTTGGACAAGTGTCTGTCACCGCAAAGATCGACCGCAAAGGCTACACACCAGGTGAAGTGATTCCAGTCTTCGCTGAATTTGACAACGCCACTTCTCGATCTGTGGTGCCCAAGGCTTACATCACTCAGACTCAGACCTTCATTGCAAGGGGCACCATGAAGCAGAAGCAAGCCGTTGTGGCCACCCTGTGTGGAGATGCAGTAGGAGCACGGCGCAGAGAGACCTGGCACGGCCGCGCCATCAAGATCCCTCCAGTCGGTCCCTCCATCCTTCAGTGCCGCATCATCAAAGTGGAATACATGCTCAGGGTGTGTGTGGACATTCCTGGCACCTCAAAGCTGTCTCTGGAGCTTCCACTGGTTATGGGGACCATCCCTCTCCATCCTTTTGGCAGCCGCACCTCCAGCGTCAGCAGCCAGTACAGTCTGAACCTGGACTGGCTCCGCATGGCCATCCCCGAGCAGCGTGAAGCCCCTCCTGACTACAGCTCGGTCGTCACCGAAGAGGAGGCCGAGCAGAATTCTGCAGCCAGCCGTATTGAGGAGGATCTCAGCGCAGTGCTGGAGCGCCCCTTCATGGCATATGTGCAGGAATTCCGCTTTAGGCCACCTCCAGTGTATAGCGAGGTGGACCCGAATCCACAGCCTGTCAACATGAGACCACGCTGCATGACATGTTGAACATCACGCTGAGCATCACGCACTGATGTCATGACTGAAATGAAGCAGAGATTTGCTTTCTGCCAGAGGCTCTGGATGTCTGAGACTGGCACACGCTCTCGGGAGCTGCGTTCATCACCTTAGGATATGTGTGGTGACGCCAGTTAAGGATGAGAAGGAGGAACTGTCTGGACTGATGGTCAGATGGATTCTTGAGTCTTTGCAAGAGATAAAAAGTAGAAGAAGTGCAAGACGGATGCATTTTTCCGCTCACGTATCTGTCTTTAATCTATCTCTGAGTAGACTTTGGTCAGTGCCCGCTAATGACTAACAACCTCTGAagcttatttttgtattatggAGGCGGCTAGACTGAGAAAGGTTTGCTTGTGCAGGAGCCTTTTTAAAGTAATGCCTAACCATGTGGGCTAAATGTTTAGGTGACTTTTCTGTACTTAAAGTCAACATTGGTGCCACTCCATATCCTGTAATCACCATCTGCTAGGCTGGAGCAATAATGCTTTAAGTGACAAACCAATGGTGGTAGTCAAAGTGCTTCCGAATGCATTATTTCTCCTTTGTATATCTACCATCAAGAACATAATGTTAATCTAAGCTCTTTTTGGTGTTTGTTGTATGcgggtaaaaaaaataagagagtTGTGCATGTTTAGACCTGCCTGAATATGCACGTGTAATACTGGGCAAAAGGAAGTTAAAGCTTTGAGTTGAGGAGTCTGATCCATCCTGGAGGCAGGATGTTTTCCTGAATAGAAAACTGCCCATGTGATAATGTTTGTTAAGAGGGAATTGTGCTGATGGCATGAACaagaatataaacatttaaggCTTTAACGTCACTCTAACAAGGtgcttttctgtgtttttgccAGCGGCCTTATATGACGATTACAATGCTGTAGCAGGCACAAACAGTCTTAAAGTCATTAGCTGGATAACAAGCCATGTTTGTTCAAGGTGCCTTTTTCTGTTGTTACAACAGCAGCGCGACTGGGTACAGGGATTATGCATGATGATGCATTAAGCTTTAAACTTGTTATACCACTCTGAAGTGTACTTAACATTCCAAAGATAGCTAATTAAATTCCAAATTGTGAAAAACAACATCAGGTAATAACACATTGAATGTACTGTTTATGGCACTCATGGAAAACGAAtgtattttatagttttttttttcatgtcaaaaatatattttcttaattGTTTTctaataaaagtaaaacaaatcTGA
>XM_026919482.2
GAGACAAACAGTTGGCGCGGATATATTTCACTGGCCCTGAGTGTGAGAAGTGAGCAAGTCGCTCGTCCAGGGCAGGGTGTGATCGACTGCAGCAGCGATGGATGTTAGAAGTATCCGGCGCTTTGCTGTGGAGCTGGACCGGCCCGGGGGCGAGGCGGTGTACAGCAGCGGGGAGACAGTGAGCGGCAGGGTGCTGCTGGACCTGCACAGGCACATGGACATTAGAGCTCTGAAGGTGCAGGGCACAGGAGTCGCTTCTGCACACTGGCTGGAGCACAGGGGTGTCGGTGTCAACACCGTCTACAACGACTACACGTCCAAGATCACATACTTCAGGAAGAGACAACATCTGATCCCAGATAATGGAGAGCTGACAACCCTTCCTGCTGGAAGACATGAATACCCCTTCAGCTTCCAGCTTCCCGAAGAgACACTGGTGACTTCCTTTGAAGGCAAGCATGGCAGCATTCGCTACTGGGTCAAGGTGAAGTTGCACCGGCCGTGGGCCCTGGTGAAGAAGATCAAGAAAGAGTTTACAGTTATCGAGCCCATTGACATCAACACACCGTCCCTACTTGCACCTCAGGCTGGAACCAAAGAGAAGATGGCTCGTGTCTGGTACCACAACTTTGGACAAGTGTCTGTCACCGCAAAGATCGACCGCAAAGGCTACACACCAGGTGAAGTGATTCCAGTCTTCGCTGAATTTGACAACGCCACTTCTCGATCTGTGGTGCCCAAGGCTTACATCACTCAGACTCAGACCTTCATTGCAAGGGGCACCATGAAGCAGAAGCAAGCCGTTGTGGCCACCCTGTGTGGAGATGCAGTAGGAGCACGGCGCAGAGAGACCTGGCACGGCCGCGCCATCAAGATCCCTCCAGTCGGTCCCTCCATCCTTCAGTGCCGCATCATCAAAGTGGAATACATGCTCAGGGTGTGTGTGGACATTCCTGGCACCTCAAAGCTGTCTCTGGAGCTTCCACTGGTTATGGGGACCATCCCTCTCCATCCTTTTGGCAGCCGCACCTCCAGCGTCAGCAGCCAGTACAGTCTGAACCTGGACTGGCTCCGCATGGCCATCCCCGAGCAGCGTGAAGCCCCTCCTGACTACAGCTCGGTCGTCACCGAAGAGGAGGCCGAGCAGAATTCTGCAGCCAGCCGTATTGAGGAGGATCTCAGCGCAGTGCTGGAGCGCCCCTTCATGGCATATGTGCAGGAATTCCGCTTTAGGCCACCTCCAGTGTATAGCGAGGTGGACCCGAATCCACAGCCTGTCAACATGAGACCACGCTGCATGACATGTTGAACATCACGCTGAGCATCACGCACTGATGTCATGACTGAAATGAAGCAGAGATTTGCTTTCTGCCAGAGGCTCTGGATGTCTGAGACTGGCACACGCTCTCGGGAGCTGCGTTCATCACCTTAGGATATGTGTGGTGACGCCAGTTAAGGATGAGAAGGAGGAACTGTCTGGACTGATGGTCAGATGGATTCTTGAGTCTTTGCAAGAGATAAAAAGTAGAAGAAGTGCAAGACGGATGCATTTTTCCGCTCACGTATCTGTCTTTAATCTATCTCTGAGTAGACTTTGGTCAGTGCCCGCTAATGACTAACAACCTCTGAagcttatttttgtattatggAGGCGGCTAGACTGAGAAAGGTTTGCTTGTGCAGGAGCCTTTTTAAAGTAATGCCTAACCATGTGGGCTAAATGTTTAGGTGACTTTTCTGTACTTAAAGTCAACATTGGTGCCACTCCATATCCTGTAATCACCATCTGCTAGGCTGGAGCAATAATGCTTTAAGTGACAAACCAATGGTGGTAGTCAAAGTGCTTCCGAATGCATTATTTCTCCTTTGTATATCTACCATCAAGAACATAATGTTAATCTAAGCTCTTTTTGGTGTTTGTTGTATGcgggtaaaaaaaataagagagtTGTGCATGTTTAGACCTGCCTGAATATGCACGTGTAATACTGGGCAAAAGGAAGTTAAAGCTTTGAGTTGAGGAGTCTGATCCATCCTGGAGGCAGGATGTTTTCCTGAATAGAAAACTGCCCATGTGATAATGTTTGTTAAGAGGGAATTGTGCTGATGGCATGAACaagaatataaacatttaaggCTTTAACGTCACTCTAACAAGGtgcttttctgtgtttttgccAGCGGCCTTATATGACGATTACAATGCTGTAGCAGGCACAAACAGTCTTAAAGTCATTAGCTGGATAACAAGCCATGTTTGTTCAAGGTGCCTTTTTCTGTTGTTACAACAGCAGCGCGACTGGGTACAGGGATTATGCATGATGATGCATTAAGCTTTAAACTTGTTATACCACTCTGAAGTGTACTTAACATTCCAAAGATAGCTAATTAAATTCCAAATTGTGAAAAACAACATCAGGTAATAACACATTGAATGTACTGTTTATGGCACTCATGGAAAACGAAtgtattttatagttttttttttcatgtcaaaaatatattttcttaattGTTTTctaataaaagtaaaacaaatcTGA
>XM_034308715.1
CGCGGATATATTTCACTGGCCCTGAGTGTGAGAAGTGAGCAAGTCGCTCGTCCAGGGCAGGGTGTGATCGACTGCAGCGATGGATGTTAGAAGTATCCGGCGCTTTGCTGTGGAGCTGGACCGGCCCGGGGGCGAGGCGGTGTACAGCAGCGGGGAGACAGTGAGCGGCAGGGTGCTGCTGGACCTGCACAGGCACATGGACATTAGAGCTCTGAAGGTGCAGGGCACAGGAGTCGCTTCTGCACACTGGCTGGAGCACAGGGGTGTCGGTGTCAACACCGTCTACAACGACTACACGTCCAAGATCACATACTTCAGGAAGAGACAACATCTGATCCCAGATAATGGAGAGCTGACAACCCTTCCTGCTGGAAGACATGAATACCCCTTCAGCTTCCAGCTTCCCGAAGAgACACTGGTGACTTCCTTTGAAGGCAAGCATGGCAGCATTCGCTACTGGGTCAAGGTGAAGTTGCACCGGCCGTGGGCCCTGGTGAAGAAGATCAAGAAAGAGTTTACAGTTATCGAGCCCATTGACATCAACACACCGTCCCTACTTGCACCTCAGGCTGGAACCAAAGAGAAGATGGCTCGTGTCTGGTACCACAACTTTGGACAAGTGTCTGTCACCGCAAAGATCGACCGCAAAGGCTACACACCAGGTGAAGTGATTCCAGTCTTCGCTGAATTTGACAACGCCACTTCTCGATCTGTGGTGCCCAAGGCTTACATCACTCAGACTCAGACCTTCATTGCAAGGGGCACCATGAAGCAGAAGCAAGCCGTTGTGGCCACCCTGTGTGGAGATGCAGTAGGAGCACGGCGCAGAGAGACCTGGCACGGCCGCGCCATCAAGATCCCTCCAGTCGGTCCCTCCATCCTTCAGTGCCGCATCATCAAAGTGGAATACATGCTCAGGGTGTGTGTGGACATTCCTGGCACCTCAAAGCTGTCTCTGGAGCTTCCACTGGTTATGGGGACCATCCCTCTCCATCCTTTTGGCAGCCGCACCTCCAGCGTCAGCAGCCAGTACAGTCTGAACCTGGACTGGCTCCGCATGGCCATCCCCGAGCAGCGTGAAGCCCCTCCTGACTACAGCTCGGTCGTCACCGAAGAGGAGGCCGAGCAGAATTCTGCAGCCAGCCGTATTGAGGAGGATCTCAGCGCAGTGCTGGAGCGCCCCTTCATGGCATATGTGCAGGAATTCCGCTTTAGGCCACCTCCAGTGTATAGCGAGGTGGACCCGAATCCACAGCCTGTCAACATGAGACCACGCTGCATGACATGTTGAACATCACGCTGAGCATCACGCACTGATGTCATGACTGAAATGAAGCAGAGATTTGCTTTCTGCCAGAGGCTCTGGATGTCTGAGACTGGCACACGCTCTCGGGAGCTGCGTTCATCACCTTAGGATATGTGTGGTGACGCCAGTTAAGGATGAGAAGGAGGAACTGTCTGGACTGATGGTCAGATGGATTCTTGAGTCTTTGCAAGAGATAAAAAGTAGAAGAAGTGCAAGACGGATGCATTTTTCCGCTCACGTATCTGTCTTTAATCTATCTCTGAGTAGACTTTGGTCAGTGCCCGCTAATGACTAACAACCTCTGAagcttatttttgtattatggAGGCGGCTAGACTGAGAAAGGTTTGCTTGTGCAGGAGCCTTTTTAAAGTAATGCCTAACCATGTGGGCTAAATGTTTAGGTGACTTTTCTGTACTTAAAGTCAACATTGGTGCCACTCCATATCCTGTAATCACCATCTGCTAGGCTGGAGCAATAATGCTTTAAGTGACAAACCAATGGTGGTAGTCAAAGTGCTTCCGAATGCATTATTTCTCCTTTGTATATCTACCATCAAGAACATAATGTTAATCTAAGCTCTTTTTGGTGTTTGTTGTATGcgggtaaaaaaaataagagagtTGTGCATGTTTAGACCTGCCTGAATATGCACGTGTAATACTGGGCAAAAGGAAGTTAAAGCTTTGAGTTGAGGAGTCTGATCCATCCTGGAGGCAGGATGTTTTCCTGAATAGAAAACTGCCCATGTGATAATGTTTGTTAAGAGGGAATTGTGCTGATGGCATGAACaagaatataaacatttaaggCTTTAACGTCACTCTAACAAGGtgcttttctgtgtttttgccAGCGGCCTTATATGACGATTACAATGCTGTAGCAGGCACAAACAGTCTTAAAGTCATTAGCTGGATAACAAGCCATGTTTGTTCAAGGTGCCTTTTTCTGTTGTTACAACAGCAGCGCGACTGGGTACAGGGATTATGCATGATGATGCATTAAGCTTTAAACTTGTTATACCACTCTGAAGTGTACTTAACATTCCAAAGATAGCTAATTAAATTCCAAATTGTGAAAAACAACATCAGGTAATAACACATTGAATGTACTGTTTATGGCACTCATGGAAAACGAAtgtattttatagttttttttttcatgtcaaaaatatattttcttaattGTTTTctaataaaagtaaaacaaatcTGA

Function

symbol description
arrdc2 Predicted to be involved in protein transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in basal plate midbrain region; blood vessel; nervous system; neural rod; and pronephric duct. Orthologous to human ARRDC2 (arrestin domain containing 2).

NR:

description
PREDICTED: arrestin domain-containing protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919474.2 True 3504 mRNA 0.46 8 20747155 20751726
XM_026919482.2 False 2543 mRNA 0.48 9 20747155 20754711
XM_034308715.1 False 2525 mRNA 0.48 9 20747155 20754696

Neighbor

gene id symbol gene type direction distance location
si:ch211-1a19.3 LOC108270827 coding downstream 36254 20707397 ~ 20710901 (-)
wdr18 wdr18 coding downstream 44353 20634216 ~ 20702802 (-)
grin3bb grin3b,LOC107656093,LOC107602803,LOC107723849,LOC107753820 coding downstream 132050 20565039 ~ 20615105 (-)
med16 med16,LOC107723868,LOC107656090,LOC107753817 coding downstream 201404 20535325 ~ 20545751 (-)
plppr3b plppr3,plppr3b,LOC107753813,LOC107593129,LOC107656087 coding downstream 215542 20511778 ~ 20531613 (-)
LOC113547474 NA coding upstream 1953 20756664 ~ 20764740 (-)
homer3b LOC108270816,LOC103030416,LOC108438642 coding upstream 10337 20765048 ~ 20781939 (-)
il12rb1 NA coding upstream 32437 20787148 ~ 20796664 (-)
abcb11b abcb11b,abcb11,LOC108270741,LOC108438644,LOC107692229,LOC107602798,LOC105911976 coding upstream 88612 20843323 ~ 20865925 (-)
rsph3 rsph3,LOC107580271 coding upstream 113676 20868387 ~ 20879064 (-)
G185304 NA non-coding downstream 87498 20659092 ~ 20659657 (-)
G185151 NA non-coding downstream 316656 20430275 ~ 20430499 (-)
G185145 NA non-coding downstream 385582 20357176 ~ 20361573 (-)
G185139 NA non-coding downstream 429883 20303541 ~ 20317272 (-)
G185138 NA non-coding downstream 462893 20283695 ~ 20284262 (-)
G185596 LOC108270818 non-coding upstream 192224 20946935 ~ 20967320 (-)
G185624 NA non-coding upstream 321618 21076329 ~ 21339757 (-)
G185633 NA non-coding upstream 340310 21095021 ~ 21173783 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding upstream 347308 21102019 ~ 21102999 (-)
G185628 NA non-coding upstream 349618 21104329 ~ 21125097 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 555012 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1034558 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 1049446 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1430781 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 3394786 17342815 ~ 17352369 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 168584 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 535738 21290449 ~ 21324977 (-)
G185718 NA other upstream 594298 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 1044435 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 1240437 21995148 ~ 21996155 (-)

Expression


Co-expression Network