G185628


Basic Information

Item Value
gene id G185628
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21104329 ~ 21125097 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219742
aaaaaaaaaaaaaacggaaaaaaaaaaaaaaaaaacaagaaaagaaaatcacatctgCGATTTTCTTACATCTTTGCATGTGCATTGTTTCCAGCAGGCAGAACAGGGTACAACATTCGTCATCACACGTCTGTCTTGATTTCGATTTCTCTTGGATAATTCGCAAGATGTAACTACAGCGCTTTAATCGTCATCACATAATATAGAAAAAACAAAGCCTGTTTAATTTCTGGATGCTCTCGCTCTCTGCGGGGCGGACTGGCGGAGGCAGCGATGATTTGCTGGGAAatctgagtgagtgagtaagcaGGTCAGGAGAGGCTGGGGTCAGAGTTCAGGGGTCACACTGGAGGTGCTTTGCGCTGCAGCAGGTACTGATGGATGTCATCGGCATCTCGCTTGAGCCAGGCCGCGTTCAGGAGAATGTTCTCGCAGCACTGCTGCACGGTGCGCTCGGCCGCTGGCGCGTGGTGGGTCTCGAAGAAACTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219742 True 490 lncRNA 0.48 2 21104329 21125097

Neighbor

gene id symbol gene type direction distance location
ap1s2 ap1s2,LOC108438658,LOC108270839,LOC107562082,LOC105893284,LOC107656112,LOC107732206,LOC107602789 coding downstream 25960 21072201 ~ 21078369 (-)
rbb4l rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 40834 21053137 ~ 21063495 (-)
rtel1 rtel1,LOC107579445 coding downstream 83356 21002789 ~ 21020973 (-)
zgpat zgpat coding downstream 103415 20990783 ~ 21000914 (-)
ptgfr ptgfr coding downstream 133466 20968610 ~ 20970863 (-)
jupa LOC108270763,LOC108438667,LOC105911218 coding upstream 82232 21207329 ~ 21230326 (-)
LOC117598433 NA coding upstream 141145 21266242 ~ 21267057 (-)
LOC113531149 NA coding upstream 169729 21294826 ~ 21303767 (-)
si:dkey-23f9.4 hyls1 coding upstream 226208 21351305 ~ 21359167 (-)
ptp4a1 ptp4a1,LOC107597142,LOC107563655 coding upstream 248344 21373441 ~ 21383927 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding downstream 1330 21102019 ~ 21102999 (-)
G185596 LOC108270818 non-coding downstream 137009 20946935 ~ 20967320 (-)
G185304 NA non-coding downstream 444672 20659092 ~ 20659657 (-)
G185151 NA non-coding downstream 673830 20430275 ~ 20430499 (-)
G185145 NA non-coding downstream 742756 20357176 ~ 20361573 (-)
G185657 NA non-coding upstream 29648 21154745 ~ 21198462 (-)
G185730 NA non-coding upstream 333733 21458830 ~ 21459164 (-)
G185737 NA non-coding upstream 369711 21494808 ~ 21496500 (-)
G185738 NA non-coding upstream 401217 21526314 ~ 21526607 (-)
LOC117598434 NA non-coding upstream 920479 22045576 ~ 22049415 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 174374 20923295 ~ 20929955 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 912186 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1391732 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 1406620 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1787955 19316119 ~ 19316374 (-)
G185706 LOC108270801 other upstream 165352 21290449 ~ 21324977 (-)
G185718 NA other upstream 223912 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 674049 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 870051 21995148 ~ 21996155 (-)
ptprc NA other upstream 2527753 23652850 ~ 23684011 (-)

Expression


Co-expression Network