jupa (LOC108270763,LOC108438667,LOC105911218)


Basic Information

Item Value
gene id jupa
gene name LOC108270763,LOC108438667,LOC105911218
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21207329 ~ 21230326 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915896.2
CTCTCCCTGTATCTTTCGGGTCTGCTCGGAAttcagggaaagagagagagagagagagagagctggacacaAACTGCTCTTTAGACGGAAGTTTCGGCTagaagtctgttttttttgttttcagacaCGTCTATAAAGAGgttttaaAATTTTGCTTGGATTGAGCCAAAGAAGCAATGATGGCAATGCAAATGGGTGAGCAAGAAGGTGTAGTGAAGGTTACAGAGTGGCAGAAGACATATTATACAACAGATTCAGGCATCCAGTCAGGGGCCACCACAGTGCGTGCTGAAGATGACACCTACACCTCAGTTACTAAGAACCCTGCAgACCTGGAGTCACAGTACACCATGACCCGAGCCCATCGAGTGAGGCAGGCCATGTTCCCTGAGACAATGGTGGAGGGGACGACCATTTTGTCCACCCAGGTGGATTTGTCCCAGCAGACCAACGTGCAGAAGCTGGCCGAGCCTTCGCAAATGCTCAAGTCAGCCATCATCCACCTGATTAACTACCAAGATGACGCTGAGCTGGCAACCCGTGCTGTTCCTGAACTCACCAAACTGCTTAATGATGATGACCAGGTGGTGGTGAACAAGGCGGCACAGATTGTGAACCAGCTGACGCGGAAGGAGGCATCCCGGCGTGCTCTGATGCAGTCGCCCCAGATGGTTGCGGCTGTGGTGAGGGCCATGCAGAACACGAGCGACATGGAGACAGCCCGTGCCACCGCCAGCATCCTGCACAACCTGTCACATCAGCGTGAGGGCTTACTGGCCATCTTCAAATCAGGAGGCATTCCTGCATTGGTGCGCATGCTCAGctcTCCTTTGGAGTCAGTGCTGTTCTATGCTATCACCACACTCCACAACCTGCTTCTACACCAGGAGGGGGCCAAGATGGCCGTACGTCTGGCTGATGGCCTGCAGAGGATGGTGCCACTGCTGAAGAAAAGCAACCCCAAGTTTCTGGCCATTACAACAGATTGCCTTCAGCTCCTCTCCTATGGCAACCAGGAgagcaagTTGATAATCCTGGCTAACGGAGGGCCCGAGGCCCTGGTGCAAATCATGAGGGGATACAACTACGAGAAGTTGCTGTGGACCACCAGTCGTGTACTGAAAGTGTTGTCAGTGTGTCCTAGCAACAAGCCATCCATTGTAGAGGCTGgtgGAATGCAGGCTCTGGGGAAGCACGTGACCGGATCTAGCCAGCGGCTGACACAAAACTGTCTGTGGACTCTGAGAAACCTGTCTGATGCTGCCACCAAACTGGACGGCCTGAACGGGCTCTTGCAGATTTTGATTGGGCTCCTTGCCACAGAGGACATGAATATGCTGGCTTGCGTCTCAGGTACGCTGTCGAATCTGACATGCAATAATGCCCGTAACAAGACATTTGTAAGCCAGAACAACGGTGTGGAGGCTCTGATCCACGCACTGCTGCGTGCTGGAGATAAGGAAGATGTGGCGGAGCCTGCCACCTGCGCCCTGCGCCATCTCACCAGCCGCCACCAGGATGCCGAGCTAGCACAGAATGCCGTGCGCACACACTACGGCATCCCGCCCATCGTCAAACTGCTCAACAAGCCACACTACTGGCCTGTTGTTAagGCTGTGGTTGGCCTGATCCGTAACCTGGCACTGTGCCAAGGGAATCAGGCACCTCTCAGAGATGCTGAAGTTATTCCCAAACTGGTCAGTCTGCTAAAAAATGCCCACCAGGATGCTCAGAAGCACGGTTCAGCCAGCCAGCAAACTTACCAGGATGGTGTGAGAATGGAGGAGATTGTGGAAGGTTGCACTGGAGCACTGCATATCCTGGCCAGAGATCGCATGAATAGAGCCATCATCACTGAATTGAATACCATTCCACTGTTTGTGCAGTTGCTCTACTCCCCAGGGGATAACATAAAGCGGGTGGCTGCTGGTGTGCTTTGTGAGCTGGCTCTGGATAAAAATGCAGCTGTCATAATTGATAACGAGGGAGCCGCTAGCCCACTCATGGATCTCCTGCACTCCAACAATGAGGGCATTGCTACATATTCGGCTGCCGTGCTTTTCCGCATCTCTGAGGACAAAAATGCCGAGTACAGGAAGCGCATGTCAGtggagctcacacacactctgttcaaACATGACCCAGCAGCATGGGAATCGGCTCAAAATACAATGATGGATCCTGGCTTTATACAAGATGATATTGAGCCTCGCTTTGTCGGTGGGTATGGATATGATCCCATGCAAGCGGAGCTTGACATAGTTGATGATTTCCCACAAGCCTGTGACTCAATGGGCAGAGCCTACACTGATGCTTGCTAACAGAATACTAAAGTTTCAAGAAGAGCACTAATGGAGGAAACGCTTCAAAAGTGAAGAGTTGCTTTCTCGAGCAGATAACTggctctgcacacacactactgtatgATATGCAACGATCACTGTGCTGTGAGGGGTAGAATCGCATATTACTCAACACTGCCTTCtcatgaaaaacacacattgtcttaccttttttttttttttttt
>XM_034308920.1
TCCTTAGGCCAGCTGATGTTaggttttaaAATTTTGCTTGGATTGAGCCAAAGAAGCAATGATGGCAATGCAAATGGGTGAGCAAGAAGGTGTAGTGAAGGTTACAGAGTGGCAGAAGACATATTATACAACAGATTCAGGCATCCAGTCAGGGGCCACCACAGTGCGTGCTGAAGATGACACCTACACCTCAGTTACTAAGAACCCTGCAgACCTGGAGTCACAGTACACCATGACCCGAGCCCATCGAGTGAGGCAGGCCATGTTCCCTGAGACAATGGTGGAGGGGACGACCATTTTGTCCACCCAGGTGGATTTGTCCCAGCAGACCAACGTGCAGAAGCTGGCCGAGCCTTCGCAAATGCTCAAGTCAGCCATCATCCACCTGATTAACTACCAAGATGACGCTGAGCTGGCAACCCGTGCTGTTCCTGAACTCACCAAACTGCTTAATGATGATGACCAGGTGGTGGTGAACAAGGCGGCACAGATTGTGAACCAGCTGACGCGGAAGGAGGCATCCCGGCGTGCTCTGATGCAGTCGCCCCAGATGGTTGCGGCTGTGGTGAGGGCCATGCAGAACACGAGCGACATGGAGACAGCCCGTGCCACCGCCAGCATCCTGCACAACCTGTCACATCAGCGTGAGGGCTTACTGGCCATCTTCAAATCAGGAGGCATTCCTGCATTGGTGCGCATGCTCAGctcTCCTTTGGAGTCAGTGCTGTTCTATGCTATCACCACACTCCACAACCTGCTTCTACACCAGGAGGGGGCCAAGATGGCCGTACGTCTGGCTGATGGCCTGCAGAGGATGGTGCCACTGCTGAAGAAAAGCAACCCCAAGTTTCTGGCCATTACAACAGATTGCCTTCAGCTCCTCTCCTATGGCAACCAGGAgagcaagTTGATAATCCTGGCTAACGGAGGGCCCGAGGCCCTGGTGCAAATCATGAGGGGATACAACTACGAGAAGTTGCTGTGGACCACCAGTCGTGTACTGAAAGTGTTGTCAGTGTGTCCTAGCAACAAGCCATCCATTGTAGAGGCTGgtgGAATGCAGGCTCTGGGGAAGCACGTGACCGGATCTAGCCAGCGGCTGACACAAAACTGTCTGTGGACTCTGAGAAACCTGTCTGATGCTGCCACCAAACTGGACGGCCTGAACGGGCTCTTGCAGATTTTGATTGGGCTCCTTGCCACAGAGGACATGAATATGCTGGCTTGCGTCTCAGGTACGCTGTCGAATCTGACATGCAATAATGCCCGTAACAAGACATTTGTAAGCCAGAACAACGGTGTGGAGGCTCTGATCCACGCACTGCTGCGTGCTGGAGATAAGGAAGATGTGGCGGAGCCTGCCACCTGCGCCCTGCGCCATCTCACCAGCCGCCACCAGGATGCCGAGCTAGCACAGAATGCCGTGCGCACACACTACGGCATCCCGCCCATCGTCAAACTGCTCAACAAGCCACACTACTGGCCTGTTGTTAagGCTGTGGTTGGCCTGATCCGTAACCTGGCACTGTGCCAAGGGAATCAGGCACCTCTCAGAGATGCTGAAGTTATTCCCAAACTGGTCAGTCTGCTAAAAAATGCCCACCAGGATGCTCAGAAGCACGGTTCAGCCAGCCAGCAAACTTACCAGGATGGTGTGAGAATGGAGGAGATTGTGGAAGGTTGCACTGGAGCACTGCATATCCTGGCCAGAGATCGCATGAATAGAGCCATCATCACTGAATTGAATACCATTCCACTGTTTGTGCAGTTGCTCTACTCCCCAGGGGATAACATAAAGCGGGTGGCTGCTGGTGTGCTTTGTGAGCTGGCTCTGGATAAAAATGCAGCTGTCATAATTGATAACGAGGGAGCCGCTAGCCCACTCATGGATCTCCTGCACTCCAACAATGAGGGCATTGCTACATATTCGGCTGCCGTGCTTTTCCGCATCTCTGAGGACAAAAATGCCGAGTACAGGAAGCGCATGTCAGtggagctcacacacactctgttcaaACATGACCCAGCAGCATGGGAATCGGCTCAAAATACAATGATGGATCCTGGCTTTATACAAGATGATATTGAGCCTCGCTTTGTCGGTGGGTATGGATATGATCCCATGCAAGCGGAGCTTGACATAGTTGATGATTTCCCACAAGCCTGTGACTCAATGGGCAGAGCCTACACTGATGCTTGCTAACAGAATACTAAAGTTTCAAGAAGAGCACTAATGGAGGAAACGCTTCAAAAGTGAAGAGTTGCTTTCTCGAGCAGATAACTggctctgcacacacactactgtatgATATGCAACGATCACTGTGCTGTGAGGGGTAGAATCGCATATTACTCAACACTGCCTTCtcatgaaaaacacacattgtcttaccttttttttttttttttt
>XM_034308921.1
GTTACTCCGGCTATATTGTTGgttttaaAATTTTGCTTGGATTGAGCCAAAGAAGCAATGATGGCAATGCAAATGGGTGAGCAAGAAGGTGTAGTGAAGGTTACAGAGTGGCAGAAGACATATTATACAACAGATTCAGGCATCCAGTCAGGGGCCACCACAGTGCGTGCTGAAGATGACACCTACACCTCAGTTACTAAGAACCCTGCAgACCTGGAGTCACAGTACACCATGACCCGAGCCCATCGAGTGAGGCAGGCCATGTTCCCTGAGACAATGGTGGAGGGGACGACCATTTTGTCCACCCAGGTGGATTTGTCCCAGCAGACCAACGTGCAGAAGCTGGCCGAGCCTTCGCAAATGCTCAAGTCAGCCATCATCCACCTGATTAACTACCAAGATGACGCTGAGCTGGCAACCCGTGCTGTTCCTGAACTCACCAAACTGCTTAATGATGATGACCAGGTGGTGGTGAACAAGGCGGCACAGATTGTGAACCAGCTGACGCGGAAGGAGGCATCCCGGCGTGCTCTGATGCAGTCGCCCCAGATGGTTGCGGCTGTGGTGAGGGCCATGCAGAACACGAGCGACATGGAGACAGCCCGTGCCACCGCCAGCATCCTGCACAACCTGTCACATCAGCGTGAGGGCTTACTGGCCATCTTCAAATCAGGAGGCATTCCTGCATTGGTGCGCATGCTCAGctcTCCTTTGGAGTCAGTGCTGTTCTATGCTATCACCACACTCCACAACCTGCTTCTACACCAGGAGGGGGCCAAGATGGCCGTACGTCTGGCTGATGGCCTGCAGAGGATGGTGCCACTGCTGAAGAAAAGCAACCCCAAGTTTCTGGCCATTACAACAGATTGCCTTCAGCTCCTCTCCTATGGCAACCAGGAgagcaagTTGATAATCCTGGCTAACGGAGGGCCCGAGGCCCTGGTGCAAATCATGAGGGGATACAACTACGAGAAGTTGCTGTGGACCACCAGTCGTGTACTGAAAGTGTTGTCAGTGTGTCCTAGCAACAAGCCATCCATTGTAGAGGCTGgtgGAATGCAGGCTCTGGGGAAGCACGTGACCGGATCTAGCCAGCGGCTGACACAAAACTGTCTGTGGACTCTGAGAAACCTGTCTGATGCTGCCACCAAACTGGACGGCCTGAACGGGCTCTTGCAGATTTTGATTGGGCTCCTTGCCACAGAGGACATGAATATGCTGGCTTGCGTCTCAGGTACGCTGTCGAATCTGACATGCAATAATGCCCGTAACAAGACATTTGTAAGCCAGAACAACGGTGTGGAGGCTCTGATCCACGCACTGCTGCGTGCTGGAGATAAGGAAGATGTGGCGGAGCCTGCCACCTGCGCCCTGCGCCATCTCACCAGCCGCCACCAGGATGCCGAGCTAGCACAGAATGCCGTGCGCACACACTACGGCATCCCGCCCATCGTCAAACTGCTCAACAAGCCACACTACTGGCCTGTTGTTAagGCTGTGGTTGGCCTGATCCGTAACCTGGCACTGTGCCAAGGGAATCAGGCACCTCTCAGAGATGCTGAAGTTATTCCCAAACTGGTCAGTCTGCTAAAAAATGCCCACCAGGATGCTCAGAAGCACGGTTCAGCCAGCCAGCAAACTTACCAGGATGGTGTGAGAATGGAGGAGATTGTGGAAGGTTGCACTGGAGCACTGCATATCCTGGCCAGAGATCGCATGAATAGAGCCATCATCACTGAATTGAATACCATTCCACTGTTTGTGCAGTTGCTCTACTCCCCAGGGGATAACATAAAGCGGGTGGCTGCTGGTGTGCTTTGTGAGCTGGCTCTGGATAAAAATGCAGCTGTCATAATTGATAACGAGGGAGCCGCTAGCCCACTCATGGATCTCCTGCACTCCAACAATGAGGGCATTGCTACATATTCGGCTGCCGTGCTTTTCCGCATCTCTGAGGACAAAAATGCCGAGTACAGGAAGCGCATGTCAGtggagctcacacacactctgttcaaACATGACCCAGCAGCATGGGAATCGGCTCAAAATACAATGATGGATCCTGGCTTTATACAAGATGATATTGAGCCTCGCTTTGTCGGTGGGTATGGATATGATCCCATGCAAGCGGAGCTTGACATAGTTGATGATTTCCCACAAGCCTGTGACTCAATGGGCAGAGCCTACACTGATGCTTGCTAACAGAATACTAAAGTTTCAAGAAGAGCACTAATGGAGGAAACGCTTCAAAAGTGAAGAGTTGCTTTCTCGAGCAGATAACTggctctgcacacacactactgtatgATATGCAACGATCACTGTGCTGTGAGGGGTAGAATCGCATATTACTCAACACTGCCTTCtcatgaaaaacacacattgtcttaccttttttttttttttttt

Function

NR:

description
PREDICTED: junction plakoglobin-like

GO:

id name namespace
GO:0003181 atrioventricular valve morphogenesis biological_process
GO:0003308 negative regulation of Wnt signaling pathway involved in heart development biological_process
GO:0005634 nucleus cellular_component
GO:0030057 desmosome cellular_component
GO:0016342 catenin complex cellular_component

KEGG:

id description
K10056 JUP; junction plakoglobin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915896.2 True 2528 mRNA 0.51 16 21207329 21230326
XM_034308920.1 False 2410 mRNA 0.52 16 21207329 21218749
XM_034308921.1 False 2409 mRNA 0.52 16 21207329 21230116

Neighbor

gene id symbol gene type direction distance location
si:ch211-156l18.8 gpr179 coding downstream 78516 21115995 ~ 21128813 (-)
ap1s2 ap1s2,LOC108438658,LOC108270839,LOC107562082,LOC105893284,LOC107656112,LOC107732206,LOC107602789 coding downstream 128960 21072201 ~ 21078369 (-)
rbb4l rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 143834 21053137 ~ 21063495 (-)
rtel1 rtel1,LOC107579445 coding downstream 186356 21002789 ~ 21020973 (-)
zgpat zgpat coding downstream 206415 20990783 ~ 21000914 (-)
LOC117598433 NA coding upstream 35916 21266242 ~ 21267057 (-)
LOC113531149 NA coding upstream 64500 21294826 ~ 21303767 (-)
si:dkey-23f9.4 hyls1 coding upstream 120979 21351305 ~ 21359167 (-)
ptp4a1 ptp4a1,LOC107597142,LOC107563655 coding upstream 143115 21373441 ~ 21383927 (-)
myom2a LOC108270736,LOC108438678,LOC107597144 coding upstream 160518 21390844 ~ 21415303 (-)
G185657 NA non-coding downstream 8867 21154745 ~ 21198462 (-)
G185633 NA non-coding downstream 33546 21095021 ~ 21173783 (-)
G185628 NA non-coding downstream 82232 21104329 ~ 21125097 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding downstream 104330 21102019 ~ 21102999 (-)
G185596 LOC108270818 non-coding downstream 240009 20946935 ~ 20967320 (-)
G185730 NA non-coding upstream 228504 21458830 ~ 21459164 (-)
G185737 NA non-coding upstream 264482 21494808 ~ 21496500 (-)
G185738 NA non-coding upstream 295988 21526314 ~ 21526607 (-)
LOC117598434 NA non-coding upstream 815250 22045576 ~ 22049415 (-)
G185948 NA non-coding upstream 847128 22077454 ~ 22083354 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 277374 20923295 ~ 20929955 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 1015186 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1494732 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 1509620 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1890955 19316119 ~ 19316374 (-)
G185706 LOC108270801 other upstream 60123 21290449 ~ 21324977 (-)
G185718 NA other upstream 118683 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 568820 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 764822 21995148 ~ 21996155 (-)
ptprc NA other upstream 2422524 23652850 ~ 23684011 (-)

Expression


Co-expression Network