LOC117598434


Basic Information

Item Value
gene id LOC117598434
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 22045576 ~ 22049415 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579096.1
TGGTAGCTGCTGCAACACAGCCAGCAACATGGCTGCTAAGGACATCTGCAGAAAACTTGACACGAATCAAACAAGATTAAAGAGACCAGGTCCCTGTTTCACCCTCTGCAACACCTCTGCCAATGTCTGATCCTGCCCAGAGAAGCAGGACCTCTGCTGTAAGAGGACATGCTGGAACTAAGTTTCTAGACCAAATTCTAAGatAAGCCACTGTGAAAAGGCTTTGCTTTGGGTCAGGTGCATGGGGTGGAAAATGATTGAGTAATTgtactccaaaaaaaaaactactttttactgctactgctgtttttatttagaccttcagaGTACTTAAAAGTTCAAAAGTACCTAAATTCTAGGTAACTACAAAGcattagtcatgcatatgacTGTCACAATAACCAGAAGTGAGATGGATTCAAACACAGTAGAGCATATATTTATTGAAACAGACAAGCACACAAATCCAAATTGAAAGGCAATATGAATGTCAGTAAACAGGCATGGGTTAGGCAAGGCACTATCAGCATAAACAGGGCAAAGACAAAACTTGAAGAACGAAGAAACTAGCAAAGTCAAAACCAGGATTacaaacacaggaaaataaGGCTTGGTAAATGTCAGAGACGGATGCACAAACTAACTGAGCGTATACTTCGCAAATCCTTGTGAATGAAAGTCTCTCTTTTAAAGTGTGTCTGATTGGGAATAGGTGTGTGTCCAATAGTCCGTGGGTTCTGGGTAGCGTAGTCTGAGGCGGCCATGCAGTGTATTCTGGGGAACTGAGTTCACAGACGGAATTGACCTGACAATGACCAGGAAACTGACGCAGATTGAacgatgttttcaggcaaaattgAAATTTAACATGAAACTGATCTTCTAATAGTTTTAGaagatttttggatttttttcaacTGAAGGAACCATCAGCATCTGTATGAgcaattgtatgcaaatataaaaatgttggGACCGCACAGACACTGCTTCCCTCAGCAATGAGGAACAAATTAACTCTCAAGGATGAATGAACTTTGGTCAAAGGGTCAATTGAACCCCaagtcaacaacaacaaaggaactgatgaaggagttggaggcatcagtacatccaccattaagaaAGTCCTACGtcaccatggcctgaaaggctgttGTGCAAGGAAGAAACCCCTATTCTAAGGCCGGCATAAGCAAGAAGAATTATCTCAAAATGCTTTTGCTATCTCAAAAGTAAAACTTCAAGAAATCAACCAGAAAGTTTCCACTTTGTCACAACTgcgtcttccagcaggacaatgaccctaagcatacctccaaagttgtaacaaaatgatttaaagacaacaaagtgaaagtattagAGTGGCCTGACCGTGACCTGCCCTGACCTGAGTCTCATAGAAAAATATGGACTGAATGGAAAATGAATGTCTAAACAGGGAAGCCTACAAACCTGACTAAGTTATACCAGTTCTGTTaggaggaatgggcaaaaattctgGCAAAGTACTGTGAGAAGCTTGTGAATGGCTATGtgtttgattcaagttcaagcaattaaaaggcaatgtcaccaaatactaacaagtGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579096.1 True 1596 lncRNA 0.41 3 22045576 22049415

Neighbor

gene id symbol gene type direction distance location
nkpd1 nkpd1 coding downstream 74765 21964103 ~ 21970811 (-)
thsd7bb LOC108270734 coding downstream 297401 21665950 ~ 21748175 (-)
spoplb spoplb,spopl,LOC108270802,LOC108412981,LOC103032629,LOC107551807,LOC107685952,LOC105911847,LOC102233870,LOC107718234 coding downstream 404898 21623669 ~ 21640678 (-)
rbms1a LOC108270806,LOC108438683 coding downstream 528599 21496997 ~ 21516977 (-)
itgb6 itgb6 coding downstream 560054 21467417 ~ 21485522 (-)
diaph3 diaph3,LOC108271281,LOC108428456,LOC107691273 coding upstream 539605 22589020 ~ 22913682 (-)
LOC113537221 LOC108271325,LOC108428455,LOC107751106,LOC107572144,LOC107691275,LOC107687383 coding upstream 871279 22920694 ~ 22940624 (-)
zgc:162816 zgc:162816,LOC108271324,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 892828 22942243 ~ 22953297 (-)
col6a2 col6a2,LOC107573124 coding upstream 907418 22956833 ~ 22979165 (-)
col6a1 col6a1 coding upstream 949002 22998417 ~ 23027930 (-)
G185738 NA non-coding downstream 518969 21526314 ~ 21526607 (-)
G185737 NA non-coding downstream 549076 21494808 ~ 21496500 (-)
G185730 NA non-coding downstream 586412 21458830 ~ 21459164 (-)
G185657 NA non-coding downstream 847114 21154745 ~ 21198462 (-)
G185628 NA non-coding downstream 920479 21104329 ~ 21125097 (-)
G185948 NA non-coding upstream 28039 22077454 ~ 22083354 (-)
G185957 NA non-coding upstream 136550 22185965 ~ 22186167 (-)
G186004 NA non-coding upstream 262398 22311813 ~ 22339594 (-)
G186028 NA non-coding upstream 328868 22378283 ~ 22380802 (-)
G186392 NA non-coding upstream 989592 23039007 ~ 23039206 (-)
LOC117598437 LOC108191637,LOC107104758 other downstream 49421 21995148 ~ 21996155 (-)
cntnap5l LOC108270728,LOC108439930 other downstream 150170 21799146 ~ 21895406 (-)
G185718 NA other downstream 695726 21349009 ~ 21349850 (-)
G185706 LOC108270801 other downstream 720599 21290449 ~ 21324977 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 1115621 20923295 ~ 20929955 (-)
ptprc NA other upstream 1603435 23652850 ~ 23684011 (-)
c11h1orf53 NA other upstream 1767112 23816527 ~ 23828091 (-)
lingo3a lingo3,lingo3a,LOC108270778,LOC108438765,LOC107596880,LOC107655199,LOC107719577 other upstream 2435357 24484772 ~ 24503368 (-)
katnb1 katnb1,LOC107596504,LOC108411466,LOC107753522 other upstream 2719513 24768928 ~ 24788894 (-)
G187530 NA other upstream 2939578 24988993 ~ 24989258 (-)

Expression


Co-expression Network