itgb6 (itgb6)


Basic Information

Item Value
gene id itgb6
gene name itgb6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21467417 ~ 21485522 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925051.2
AGGTAACAGCGCCTGCCCACTTTACACTTCCCTCCAGGTGAGAGAAGTACCTGCGTGttccacacacttcacacacacttcacacacctgGCTAGCTTCACGTATAGCCTGTTTATTCCCCTCACAAAGCGATATGAACTCGGCTCATCATCATTTCTTACCTATACAGCAACCTTGAGGACTAATGGGGATTGTTTTACTGAGCCTGTTTCTTCACTACTGGCTTAGTACGGTAGAAGGCAGCTGTGGGGCGGAAGGCGTGCGGACGTGTGGCGAGTGCGTGCAGCTGGGGCCGCAGTGCGCGTGGTGCtctctacagaaTTTCACAGATTCTTTAGTGGTGAGTGAGCGCTGCGGTACGCGTGAGGAACTTCTTCTTCAGGGATGTCCGCAAGAGTTCATGCAGTTCCCAGTGAACACCATGGAGCTGCTGGCTGACGGGCCATTAGGGAAAAGTGCAGACCCCACTAATGTGTCCTACATAACACCACAGAGGATGGCGCTCAAACTTCGGCCAGGAACCCAAGTGACCTTTCAAGTAAAAGTACAACAATCAGAAGACCATCCAGTAGATATGTATTACCTTATGGACCTCTCAGCTTCAATGTATGATGATCTGCAGAGAATCAGAGACCTGGGGTCAACTCTTTCCAAAAAAATGGCTAGTCTCACAAGTAATTTTCGATTGGGATTTGGTTCGTTTGTGGAGAAGCCAGTTCTGCCATACATTAAAATTACTCCAGAGGAGCTGGCAAACCCCTGCTGGAGTGTAGAACATGTTTGCCTGCCCACATTCGGATACAAGCACGTCCTCCCATTAACCAGCAGCACAGACCAATTCAACAAGATCATTTCTAAACAGCGTGTCTCAGCAAACAATGACATTCCAGAGTGTGGCTTTGATGCCATCATGCAGGCAGCAGTGTGTGGGGATAAGATTGGGTGGAGGAATGATTCCATGCGCTTGCTGGTTTTTGCGAGCGATGCAGACTCTCATTTTGGGATGGACAGCAAAATGGCCGGCATCGTCATCCCTAATGATGGACAGTGCCACCTAGACAGCAACAATGAGTATTCCATGGCAGGCCATTTGGAGTATCCAACCTTAGGACAACTTATAGACAAACTAGTGGAAAACAACATCCTCCTCATATTCGCAGTGACTGAAAATCAGAGACAAACCTATGAGAACTATGCAAATCTAATTCCTGGTGCAACAGTGGGTGTGTTGGAAAATGATTCCCGGAACATTCTCGAACTGATCTTGACTGCATATAAGGAGCTGAGGTCCGAGATTGAGCTGGAAGTTCTGGGGGACACAGAAAATCTCCAGATCTCCTTCACAGCTCTCTGCCCAGATGGTGCAGTCCGGCCGGGGCTTAAACACTGCACCAATGTCAAAGTTGGAGACATAGTGGCCTTTAATGTGACGATGGAGCTGGACAGCTGTCTGGATGCTCCACATCATTTCTCCCTGCGGCCCGTAGGCTTCCAGGACACTCTGGAGGTGGAGCTGGagtcgctgtgtgtgtgtgattgccaGAGGACCACCGAGCTAAACAGCACACACTGCAGTGAAGGACAAGGGGCTCTGGAGTGTGGCTCCTGTATATGTGACCCTGGGTTCATTGGTCCCAAGTGTGAGTGCGCAGAGGACAAAGGTCAAGTCAGTGACTGCAGGGCCAATGATAGTGCAGAGGTGTGCAGCGGGCAGGGAGAGTGCTTCTGCGGCCAGTGTGTGTGCTACCCATCCAGCTTTGGGCTCGTGTATGGAAAATATTGCGAGTGTGACAACTACTCCTGCCTCAGATTCAGAGGGAAGCTGTGTGGAGGTAATGGAGAGTGTAactgtggtgagtgtgtgtgccacGAGGGCTGGACAAGCGAGTATTGCAACTGCAGCACtagcacacacacctgtgagtCAGCGGATGGGTCTGTCTGCAGTGGACGTGGAAAGTGTGTATGCGGGAAGTGCGAATGTTCTGTTCCCGGAGCTTCAGGGGATAAGTGTGAGAAGTGCGCTACCTGTGGAGACGTCTGTAGCTCAACCAGGTCTTGTGTGGAGTGTTATCTGAAAACCGATGAACCCTCAGAAGACTGTGTCCATAAGTGTAACGCTATTCATACCACTGTCACCAACTCTACAGACTTTGACGAGAGCCATGCGGTGATGTGTGCTCTCCGCAGTGAGAACGAGTGTCTGATCTCCTTCACATTAGTGGGCGGTGAAAAGGGAAGCACTGTGTACAAGCTCAGGCTTGATTGTCCCAAGCCTCTCAATATCGCTATGATCGCTCTGGGTGTTTGTATGTCTGTACTCACTATTGGCATCATACTTGCGGTGGTTTGGAAGCTTTTCATATATGTCCACGACCAAAAAGAGGTTGCCAAGTTTGAGGCGGAGAGAACTAAAGCAAAATGGCAATCAGGCACAAATCCTCTTTTCAGGAGCTCAACATCAACATTTAAGAATGTAGCATATAAACATACAGTTAGATAGAGAGAAGATATCTGCTGACAAGACTAAAGGACAAACTGATTTAATATACTGACTATAAAGTATTTTTCTTGGAAtggtgtgtgtctatgtgtgtgcacatatgagtgactttttaaaaatattttttcagcgGTATTTTCTCAGAGCCAGGCTGtgggaaatattttatattgttaatataTTTGCTGCTAAATGATTTAACAAAATCAAAGACAGCAAATGCAGAATTGTTTTGAAccttgatataaaaaaaagaaatgagtgaAGTAGAAAACaatgtatatattcatttagggaaaaaatcctgtaatttattaatgattattcaGTGGAGTCAGCTGAAATTGCACATTTTctagttttcttttaaaaatgtgttactgGCAGCCGTATTTATTGCTTGAAAGCAATACTttcagaaaattattttataggCTGGTGACTATCTCATGATTGCTTGTTTGTGTTACGAGCTGTCATCTTTGGCTCATCTCAGTTTCTGGAAAACTACAAACTACAGAATCAAAAGACAGAAGCAGACAAGGTGAAAAAGCATTTTTACACTTACATTAactgttttaattacatttaccatTTTGGTATTAAGGTTTAGTCGATGCAATAACCTACTtttcacacacataaacatctTTGTAACTCATCATCTGTCATTTTAATCCAGGCAATCTCTCTAAGGTATCATTTTAATCCAGGGTGTTGATACTTCTGTAGCTTTCCTTACTGTATTTGTtatatgctaatgctaactacTGTAAGTGAGAACACTGGACATAACGGTTAAAGCATTCATTTACAACAGTTTCAGATTGTTAtattgtgtgctgtgtgtattatGTTGTGGTTTATAAAATTTGGCCTATATGATGGACTACACTGAGGCTGAGCCTTGTGCTGTTTTAATGTCCTAAGTTAAAGTTTCAACGTCGAATAAAGGTGGATTTTGCTGGCAAA

Function

symbol description
itgb6 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin alphav-beta6 complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including adaxial cell; liver; musculature system; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1H. Orthologous to human ITGB6 (integrin subunit beta 6).

NR:

description
PREDICTED: integrin beta-6

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06589 ITGB6; integrin beta 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925051.2 True 3475 mRNA 0.45 16 21467417 21485522

Neighbor

gene id symbol gene type direction distance location
pla2r1 pla2r1 coding downstream 1483 21444376 ~ 21465934 (-)
ly75 LOC108270733 coding downstream 23438 21416741 ~ 21443979 (-)
myom2a LOC108270736,LOC108438678,LOC107597144 coding downstream 52114 21390844 ~ 21415303 (-)
ptp4a1 ptp4a1,LOC107597142,LOC107563655 coding downstream 83490 21373441 ~ 21383927 (-)
si:dkey-23f9.4 hyls1 coding downstream 108250 21351305 ~ 21359167 (-)
rbms1a LOC108270806,LOC108438683 coding upstream 11475 21496997 ~ 21516977 (-)
spoplb spoplb,spopl,LOC108270802,LOC108412981,LOC103032629,LOC107551807,LOC107685952,LOC105911847,LOC102233870,LOC107718234 coding upstream 138147 21623669 ~ 21640678 (-)
thsd7bb LOC108270734 coding upstream 180428 21665950 ~ 21748175 (-)
nkpd1 nkpd1 coding upstream 478581 21964103 ~ 21970811 (-)
diaph3 diaph3,LOC108271281,LOC108428456,LOC107691273 coding upstream 1103498 22589020 ~ 22913682 (-)
G185730 NA non-coding downstream 8253 21458830 ~ 21459164 (-)
G185624 NA non-coding downstream 127660 21076329 ~ 21339757 (-)
G185657 NA non-coding downstream 268955 21154745 ~ 21198462 (-)
G185633 NA non-coding downstream 293634 21095021 ~ 21173783 (-)
G185628 NA non-coding downstream 342320 21104329 ~ 21125097 (-)
G185737 NA non-coding upstream 9286 21494808 ~ 21496500 (-)
G185738 NA non-coding upstream 40792 21526314 ~ 21526607 (-)
LOC117598434 NA non-coding upstream 560054 22045576 ~ 22049415 (-)
G185948 NA non-coding upstream 591932 22077454 ~ 22083354 (-)
G185957 NA non-coding upstream 700443 22185965 ~ 22186167 (-)
G185718 NA other downstream 117567 21349009 ~ 21349850 (-)
G185706 LOC108270801 other downstream 142440 21290449 ~ 21324977 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 537462 20923295 ~ 20929955 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 1275274 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1754820 19706082 ~ 19712597 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 313624 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 509626 21995148 ~ 21996155 (-)
ptprc NA other upstream 2167328 23652850 ~ 23684011 (-)
c11h1orf53 NA other upstream 2331005 23816527 ~ 23828091 (-)
lingo3a lingo3,lingo3a,LOC108270778,LOC108438765,LOC107596880,LOC107655199,LOC107719577 other upstream 2999250 24484772 ~ 24503368 (-)

Expression


Co-expression Network