nkpd1 (nkpd1)


Basic Information

Item Value
gene id nkpd1
gene name nkpd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21964103 ~ 21970811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932731.2
ACACACACCCTCTAATGTGCTGCTGTTTAAAGGAATGGAGACAGCGTTATGAGCATTGTGGTAAACTTCATGACTTTATTAACTCTGCTTGTAGCAGgaTAGCTGGAGGAGAGATTTTGTTGATATTTTCTATACACAGTGACAGAAGATAATAATGGAAAGAGAGCGATACACAGATAATGTATATGCATATGCATTATACAAAACTCTTGCAAAAGTTGATTCTCCATTGACTGTAGGCTTATACTCATCATGTACCAGCAGGATTAAAATGATTCTTACAAGCATTGAAGGTCACATGAATGATGAGgcaaagagaaaagagcagaacaGAAGCAGGTTCTCTATTGGGAACCTGATTTCACTAATATTTCGTCTCCTTTTCTATCGACCCGtgtggacagaaaaaaaagagagaaagaaatgcaaTCGCTATGTGTTTGTAAGGTTTAGTGCTTGGCACTTTGCAGGCAGTGACATGCTCTGGGCTGGCTTGGTGATGCAGTTGTGCCAAGCTCTTCAGGACAATTTTGGCAAGCTTCAGCTCAGCCTCTTCCGAATAGCTCAGTATGACGAAGAAAAGTATGGTATGGAAAAAAAGATTGAAAGCAGCTCCAAAGACTGGAGGTCAAAGAAGGTCTGCTGCTGCCCACTGTGGGTCTGTGTCCTGATGACACTGATGGTTTGCCTCTTTATTTTGGTACcaatcattattttttcatttcctgaagTAAAGCCTCAAGGAGATGGAGAGAACAACAAAGAGTATGGAGTGTTGGAGGGGTTTATCATTGCAATGTTAGGAGTCCCTGCAGTTGGAGCTGCGAGATTTATTTTCATGCTGACGAAGAACCTAATCTTTAGTCAGGATGTTAATGTCAGAAATGCCTTGGACAACAAGAAGGTCAGTGAGCAGTTAGGCTTAATGCATGAAGTTCGGAAGGAGATGAGGCTATTGTCATGCTTTATTCACTTCATGGAGATTTTTGAGAGGCAAAAGATAAAAGTGGTGCTGGAAATCACCAATTTGGACCGCTGCACACCAGCAAAAATTGTTGGGGTCTTGGATGCCATCAACATACTTCTTTCTGATGAGGAAAGCCCCTTCATTTCTCTACTTGCAATTGACCCAGAGGTTCTTACCCAAAAAATAGATCAGGCAAAGGATTGCTTTAGTAAAAAGGACAGAGCTTATGGCTTCCTGGACCGCATAATCACACTGCCCTTCACAGTGCCACCTTTATGCGAGGTATCAAAGCGCAATGTcttcaaaaaaatattattggaTCAGTCTGAAAGGCCTTCTGACACCCGAAGAGATGAGGTTGAGAGTTTATGTAGCATAAAGACCTATGTTTCTTTAGAAGATGTCCCTTTGAATGAGAGCAATCTGAATGATGAGGGCCAAGACACTTCCCTGGGAGCAAGCAAGACCACATCCTATAtatttaatgagaaaaaagtggaagatttAATTCAAGAAGCATTCGAAAGCATATACTTACGTGACAAAAGTAGGCTATACACTTTTATCTCTGAAAATACTGTGTCTATGAGGAGGGTCACCAATTCTATCAGGGTGTCCATGATGGTCATTAATGGTCATAATGTTGAGGTTTCCCCACCTGAAAGAGTTGCTGCTTGGGTTGTGCTGGTAGACCGCTGGCCTTGTAGACTAAGTTGGATACTTCAATGTATGGAAGATGAACATCAGAATCTGCAGACTCATCAAACCATGGTTGTCTGTGATCATAGCAGGACTCTATGGGATGTGTTCGATGAGAATAGGATAGAGCTCCACATAATTAGGGAGGAGGTGGAGAAGTTCCTGGAAAGAGATGATGATCCTGAGCTGTTTGAAAGATTTCTCAAAAAGGACTACAAATTCACAGTCCCTGAGGCATATCAACTTAAAGAATATACAGTTAACCTGGACTATTCTATCAAGAATGAGTTGGCAAGGATCAGACAAATCAGCACTTTGAGAACAATAGGAAAATATACGTTCAACAGTTTGTCTCCAAACGCTGTCCTCAAAATGTCTGTGGAAGATGTTTGCAATGAACTATCCAGGCTGAAGCTCCCTGAAACATATGCTGAGATTGTAAAGCAAAATGATATAAATGGACAAACACTGGTTCTTAGTGACCCAGCTGATCTGAGACAGGTAATGCAAATGACTCTTGGTGAATGGACAGCTTTTAGGATTCACTTTCTTGGAGTCATGTCATGTTATCATCCGAGTAAAGCTATGTCAGCACCAGCTATCTCAAATCCTAATGCGATTTGCCCATCTAGTATGTCTAGCAGGAGCCATATGcatcatatttaatattgttcCTACATTGGTCATTATCGTTAAACAAAAGAATTCTGGATTTTGTAGAAATCCAGTGATTTAAAATTTTGTCTAAATtgtatgataaataaataatatatgtcATAGCGTGAAAATAATCAGAAGAGATTTTAATCACTTTGCTTATGGTAAATAATGGTGGCTCACCTTTTTGCACTGTGATGTTGCAACCTTAGCAGGCCAATGTGTCATTTCTTTGATGGGAAAACTATTGTGCTTCTAACCCTCTTGCTATCAAAATGTCAGCATAATATAATGTTTgacttgtttaacattttaggCAACTACATTAAGTGGAGAAAACTTAAACATGCATGGtgtgcaaataaaaatatttccatgatgtaaattattttttactgaTTCACATTGCTTCACTGTATTTCTAAGCACTGCAGCACTGACTATTGTCAGGGGTACTTAAGGCAccaccatgatttttttttaaaactgacattACAGTGGTGGAGACCaactattattgttgttattatataagttgttatatttgttatacGATCCACtccaattattggcacctttcatgaaaatgagcaaaaatggatataaaattaatcatgcatgcaataagtgatatttcagtttaaacATATGGCGACCTGATAGCTTTATTTTAACAAGGACTTGAAGTTTGTACATTATGCAAAAGTTTGGCACCCAGGCACCCGTCGTCATATGGTGGtccatggaattttttttttctgcctcttctGGTGGGAGTTTGAGAACTCCTGGACTAGAGAATGTGAAGTATTATTCCCTGTGCCATTCACAGTTAATTCAGCAAAATCAGCTCAGTTTGAAGTGCAGAAATTATCTTGCATTTCTGCTCAATTTTGCTCGATTTTGCTCAAATACCTATAATGCACAGCATGGTGTGTGCATAGTCCATGCATCCATGTGCTAAAATGTCTAGGTAATTATTGTCATGCTGACACAGGCATAAGGATTTTGTTAATATCGACATGTTGTTATGTTGATTGGGCACAAGTCCTTgcattattttggatttttatttatttatttttttggattgttgaccttcaaaataaaattgtatcCAAGTCTCCACATTTATTACACTACCACTAAAATTTTGACCTAAAATCTAATGatagagagaagagaaataTGTTTCCTGTAAATCTTGTCAGTCAGCTGGTTATTGCTCCCCTAAAAATTGATCTGAAATCAATATGTACTACAAAAACATCACTGTTACACTGCACAAACTTGGTACTTAAAGGAAATAAGAGGAGATGATTTGATTGTTACCACCTGCATCATGTATCATGTTAGCACCAAAATCGGCACAGGACTACACTATCCATCAGCCCCTGAACATCACATGACTTCATGTTTTGGTTTTCACATGATTTGGAATCTTCATGATATATGTCaggatatgtatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtatgtatatctCTTATGATGCAGATTGTATGACTTGTTCTTGTGTATATGCTATGATCATGAAAATAGAGCCCATAATTATATGGCTTCTGTAATTTGTGATACCATATTACAAAACTAGCCACTGTTAAATACTTTAGGTTTTGCAGTTTAAAATGCTTGATATTCCGGataaatatttctaaacatGTACTGTGTTCATAGTGTTAGGCAAACCTGGCAGAAATTTAGTTATGAATCAGATAATCAGAGTAAAATTTCTGTAACAATGTGTAACTGTG

Function

symbol description
nkpd1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NKPD1 (NTPase KAP family P-loop domain containing 1).

NR:

description
PREDICTED: NTPase KAP family P-loop domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932731.2 True 4126 mRNA 0.38 5 21964103 21970811

Neighbor

gene id symbol gene type direction distance location
thsd7bb LOC108270734 coding downstream 215928 21665950 ~ 21748175 (-)
spoplb spoplb,spopl,LOC108270802,LOC108412981,LOC103032629,LOC107551807,LOC107685952,LOC105911847,LOC102233870,LOC107718234 coding downstream 323425 21623669 ~ 21640678 (-)
rbms1a LOC108270806,LOC108438683 coding downstream 447126 21496997 ~ 21516977 (-)
itgb6 itgb6 coding downstream 478581 21467417 ~ 21485522 (-)
pla2r1 pla2r1 coding downstream 498169 21444376 ~ 21465934 (-)
diaph3 diaph3,LOC108271281,LOC108428456,LOC107691273 coding upstream 618209 22589020 ~ 22913682 (-)
LOC113537221 LOC108271325,LOC108428455,LOC107751106,LOC107572144,LOC107691275,LOC107687383 coding upstream 949883 22920694 ~ 22940624 (-)
zgc:162816 zgc:162816,LOC108271324,LOC108428454,LOC107691276,LOC107737263,LOC107687385 coding upstream 971432 22942243 ~ 22953297 (-)
col6a2 col6a2,LOC107573124 coding upstream 986022 22956833 ~ 22979165 (-)
col6a1 col6a1 coding upstream 1027606 22998417 ~ 23027930 (-)
G185738 NA non-coding downstream 437496 21526314 ~ 21526607 (-)
G185737 NA non-coding downstream 467603 21494808 ~ 21496500 (-)
G185730 NA non-coding downstream 504939 21458830 ~ 21459164 (-)
G185657 NA non-coding downstream 765641 21154745 ~ 21198462 (-)
G185628 NA non-coding downstream 839006 21104329 ~ 21125097 (-)
LOC117598434 NA non-coding upstream 74765 22045576 ~ 22049415 (-)
G185948 NA non-coding upstream 106643 22077454 ~ 22083354 (-)
G185957 NA non-coding upstream 215154 22185965 ~ 22186167 (-)
G186004 NA non-coding upstream 341002 22311813 ~ 22339594 (-)
G186028 NA non-coding upstream 407472 22378283 ~ 22380802 (-)
cntnap5l LOC108270728,LOC108439930 other downstream 68697 21799146 ~ 21895406 (-)
G185718 NA other downstream 614253 21349009 ~ 21349850 (-)
G185706 LOC108270801 other downstream 639126 21290449 ~ 21324977 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 1034148 20923295 ~ 20929955 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 1771960 20183042 ~ 20192143 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 24337 21995148 ~ 21996155 (-)
ptprc NA other upstream 1682039 23652850 ~ 23684011 (-)
c11h1orf53 NA other upstream 1845716 23816527 ~ 23828091 (-)
lingo3a lingo3,lingo3a,LOC108270778,LOC108438765,LOC107596880,LOC107655199,LOC107719577 other upstream 2513961 24484772 ~ 24503368 (-)
katnb1 katnb1,LOC107596504,LOC108411466,LOC107753522 other upstream 2798117 24768928 ~ 24788894 (-)

Expression


Co-expression Network