G185730


Basic Information

Item Value
gene id G185730
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21458830 ~ 21459164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219862
caaccATCCACATCAGAGACCTCTatccttttatttttgcttccaccagtccatccatccaaccaaccACATCAGATGATTCCATTCATCCAtgtatttatccatccatccattcatccacccatctatccatccaaccatccaccTCAGGCCCATTTAtcaatctgtccatccatccatccatccatccatctattcatcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219862 True 203 lncRNA 0.44 2 21458830 21459164

Neighbor

gene id symbol gene type direction distance location
ly75 LOC108270733 coding downstream 14851 21416741 ~ 21443979 (-)
myom2a LOC108270736,LOC108438678,LOC107597144 coding downstream 43527 21390844 ~ 21415303 (-)
ptp4a1 ptp4a1,LOC107597142,LOC107563655 coding downstream 74903 21373441 ~ 21383927 (-)
si:dkey-23f9.4 hyls1 coding downstream 99663 21351305 ~ 21359167 (-)
LOC113531149 NA coding downstream 155063 21294826 ~ 21303767 (-)
itgb6 itgb6 coding upstream 8253 21467417 ~ 21485522 (-)
rbms1a LOC108270806,LOC108438683 coding upstream 37833 21496997 ~ 21516977 (-)
spoplb spoplb,spopl,LOC108270802,LOC108412981,LOC103032629,LOC107551807,LOC107685952,LOC105911847,LOC102233870,LOC107718234 coding upstream 164505 21623669 ~ 21640678 (-)
thsd7bb LOC108270734 coding upstream 206786 21665950 ~ 21748175 (-)
nkpd1 nkpd1 coding upstream 504939 21964103 ~ 21970811 (-)
G185624 NA non-coding downstream 119073 21076329 ~ 21339757 (-)
G185657 NA non-coding downstream 260368 21154745 ~ 21198462 (-)
G185633 NA non-coding downstream 285047 21095021 ~ 21173783 (-)
G185628 NA non-coding downstream 333733 21104329 ~ 21125097 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding downstream 355831 21102019 ~ 21102999 (-)
G185737 NA non-coding upstream 35644 21494808 ~ 21496500 (-)
G185738 NA non-coding upstream 67150 21526314 ~ 21526607 (-)
LOC117598434 NA non-coding upstream 586412 22045576 ~ 22049415 (-)
G185948 NA non-coding upstream 618290 22077454 ~ 22083354 (-)
G185957 NA non-coding upstream 726801 22185965 ~ 22186167 (-)
G185718 NA other downstream 108980 21349009 ~ 21349850 (-)
G185706 LOC108270801 other downstream 133853 21290449 ~ 21324977 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 528875 20923295 ~ 20929955 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 1266687 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1746233 19706082 ~ 19712597 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 339982 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 535984 21995148 ~ 21996155 (-)
ptprc NA other upstream 2193686 23652850 ~ 23684011 (-)
c11h1orf53 NA other upstream 2357363 23816527 ~ 23828091 (-)
lingo3a lingo3,lingo3a,LOC108270778,LOC108438765,LOC107596880,LOC107655199,LOC107719577 other upstream 3025608 24484772 ~ 24503368 (-)

Expression


Co-expression Network