myom2a (LOC108270736,LOC108438678,LOC107597144)


Basic Information

Item Value
gene id myom2a
gene name LOC108270736,LOC108438678,LOC107597144
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21390844 ~ 21415303 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920140.2
ATCTTCCAGTGTTATCCCGTTCGCACACATCCCTCTCATCCTTTTGCTAACGGCTACTCAGAGGGCGAAATGAGTTTTGAAAATGGAGGTAAACGCTATATATAGTCTGAAGTGTCACCATACATGGGgtggaagagagaagagagaagcaAGGCTCTCTTCGTCTGAGAGAGGGACATTATTTTTGTTAGGGTCAGCAAGACTCTGCCAGAGCTCTCAGGCCGACCTGACGCTCACTTCCTGACCGTCCACTTCTCCAGGGTTTTCCTGACATGCCTACGAGGGCCATGCCGTTTTATcagaaaacacagacacaggttGGACATCAGTATTCCAGCTCAAAGCATGTTGTCCAGCAGATCTCATCGAGGAAATCAAGCACTAAGTCAACGAAGAAGGAGCAGGTCGAGGCCACTGAGGTTATGGCGGAACCAGCCTATACGGTGCCAGCCTTCAGAGAGAGGGAACCTGAAGGAATGGAGGAATATCAGCGTGTGTCCTCTCATCTTGAGAGAAATCTGACTACCCTGCAGGAAGAGCTGCACAGTATGAGGGTGGCCACTCATGAGCAAGTGGTGAATATTGAGATCACAAATGAAATGAGAGCAATGAAATACATCAGGAAAGAGCTTCCCATTGAGATTCCTAAAGTCCCAGACTTCCTGCTGGGTCTGAGATCTCATACCGTGTGGGAGAAGACTCCAGTCAAGCTCTTCTGCACTGTCTCTGGCACCCCCACCCCCATTGTCCAATGGTATAAGAATAATGTTCCCATTGACCGTCTGAGTGCTCCTGGAAAATACAGAATCGAAAAGAAATATGGAGTTCACAGTCTGATTATTAGCAGATGCACAACAGCCGATTCTGCTGTGTACAGCGCTGTAGCTACCAACTCCCAGGGAAAGGCCATCTCTAAGGCCACAGTCTGTGTGAGAAGACCATCTGGGGCTGCAGAGAGCTCTTATCTACCAGGCCAAGCACCCTTGCCTTCTGATATCCAGCGTAGCAAGCTAGAAGTGACCCTGCTCGATAGTTTTGGAGTGACATTTGGCACAGAGAGCGAGTCATTGACTCTGGTGgcaaacatggtggtggtgcCTGACCTTCCTAATCTGCCACCAGAGGTTATGTGGTATAGAGATGATACTCTACTGACACCATCTAGATGGGCTGAGATGTATGTTGGTGGTGGGACTGCCAAGCTGACTCTTCCTCACCTGAACAAGGATGATGAGGGTCTCTATACTTTGCGCATCTGGACCAAGACTGGAACGACTGAGCACAGCGCCTACCTGTTTGTCAAGGATGCTAAGCCTTCAGTAGCTGGAGCCCCAGGAGCTCCAATGGACGTCACAGTCTCTGATGCCAATAAGGATTATGTCCTCGTCTCCTGGAAGCCTCCCAACGTCACTAATGAGCCACACATCACTGGTTACTTTGTGGACAGACGCAAGTCTGGAACTAAGGACTGGGTCCAGTGCAACAGCACCCCTGTTGCGGTGTGTAAGCTTCCTGTGCATGGGCTCACTGAGGGGGATTCCTATCACTTCAGGGTCCGGGCTGTGAACAGCGCAGGCATCAGCCTGCCCTCCAGGATGTCCTCTGGAGTGACCGCTGCTGATGTGGAAAGTGACGTGGAAGTGATTAAAATCGAGGGGAAGTATGATATTGCAATTCGACAGGAGGAGCTGCAAGGAGTGTATGTCACGTTGCCGGAGCCCCCGACAGACGTGCATGCTactgaaataaatcaaacataTATTGTTCTGAGCTGGAAGCCGCCTATTCCCCGAGGACGGGCAACTGTGTGGTACCTCattgagaagTCGGTGGGTGACAGTAACTTGTGGCAGAGAGTCAACACAGGCGTACAAATCCGCTCCCCACGTTGCCCTCTTTACGATCTGGAGGACAAGAACGCATACCGTTTCCGTGTTATCACAGTCAACAAGTACGGCCCGAGCGAGCCATCAGAGCCCTCAGCTCTCATCCAGAAGGCAGATCCTTATGGCTGCATTCCAAACATTGgAGTTCCCTCAGCTCCGGGTCAGGTCATCACTTCTAGAAACACCAAAACGTCTGCCTTTGTGCAGTGGGATCCCCCCAAACAGGGCAAAAACCTCATGGGCTATTATGTGGATTGCTCTGTGATTGGCTCCAAGgtctggaccccctgcaatcaCAGGCCCTACAAGCACACCagGTTTGTGGTCCATGGCCTGACTCCTGGCGATACGTATATATTCCGTGTCCAGGCAGTGAATGCCTATGGTCTGAGTGAAGAGTCTCAGGAGTCCGCTCCACTCTTCATTGATGCTGCACTTGagagaggagtgGATTATGCTGTTCCCTCTGCCCCGTACGGCATCACTCTGCTCAGCTGTGACGGAACCTCCATGACCCTGGCCTGGAAACGCCCTAAACACACAGGTGGAAGCAGGATCACGTCCTACTACCTGGACAAACGTGAAGCAGACTCCGTGTTGTGGAAGGAGGTCAGCTCAAGACCTGCCACTAGCAGGGTATATAAGGTGGAGAATCTGACCGCTGGAATCTTCTATGAGTTTAAGGTACAAGCTGGCAATATGGCTGGTGTCGGTCTGCCATCTGAGCCCAGCGTTCCATTTGCCTGTGAGGCCTGGACCATGCCTGAGCCTGGCCCTGCATATGACATCAGTTTCTGGGAGGTGCGGGATGATTCGCTCCTGGTGCAGTGGAAGGCTCCAGTGTACACTGGGGCCAGTCTCATCACAGGTTACTTTTTGGAAATGGCCAAGAAGGGATCCCTTGATTTTGTCGCAGTGAATGCTGAGGCTGTGAACCATTGTTACTTGAAGGTGACTGGTCTGGAGACAGGAGCTTCATATGTGTTTAAAGTGTATGCAGTGAATGCCTTGGGTAAAGGAAAGGCCTCAGATGTGtctgaggctgtgtgtgttaaagctctgCCAGGTACAAAGGAGATTGTATGTGGTGTGGATGAGGAGACTGGAGATGTTTTCTTGTCCTTTGAGGCTTGTGAGACATCTGAGCTCTCCAACTTTATTTGGTCAAAGTCCTACAAAGAAATCAGTGAATCCAAGAGAGTTACTGCCTCAACTGTCGGAAGAATCTCCAGGCTGACGTTTGTAAACCCTGACAAGGAAGATCTGGGTCTCTACTCTGTGGCTGTGACTGATACAGACGGAGTGTCCTCTAGTTACACCCTCAAGGAGGAGGAACTCCAAAAAATGCTTGAGCTCAGCTACAACATCAGAAATCCAATTGTTCCCCTGAAGACAGAGCTGAACTACGAAGTTCTTGAGAAGGGTCATGTGCGTTTCTGGCTGCAAGCCAAGAAGCTGTCCTCTGCTGCGTCCTACAGGTTCATCGTTAATGATAAGGAGATCACTAGTGCTGAGGGTCAAAAGATTAGCCACAATGCTTCCACTGGAGTTATTCAGATGGTAATTGAGCACTTCACCAGGGCCAATGAGGGCACATATACCCTTCAGATCAGTGATGGAAAAGCCAAGAACCAAAGCTCCCTGGTGCTTGTGGGAGATGTCTTCAAGGCTGCACTGAAGGAGGCTGAATTTCAGAGAAAAGAACACCACAGGAAACAAGGTCCTCATTTCTCAGAGTACCTGTCTTTCCATGTGGATGATGACTGCACTGTTAAGCTTGTATGCAAGTTGGCCAATGTAAGGAAAGACACCACGTTTACCTGGTttaaagaagatgaagaaatcACTCTTGATGTCGCACCCAATCCAATGACTGGATCCTGTGCTCTTCCTATTCCCTTGTTTTCCAGAAAAGACCAGGGCATTTACAAAGCTGTTCTGAGTGATGATCGTGGAAAGGATACTTCTGTTTATGACATTTCTGGCCAAGtATTTGAGGATATCATCAATGCCATTGCCCACATTGCTGGGTCTTCTGCCTCTGATCTGATGTTGCAGTGCACACCAGAGGGCATCAGACTGCAGTGCTATATGAAATACTATACAGAGGAAATGAAGACCAGCTGGTTCCACAAGGAAAGTAAAATCGCCTCTTCAGAGAAGATGAGGATCGGAGGCACATCTGAAATGGCCTGGATGCAGATTTGTGAGCCTACTGATAGGGAGAAGGGCCATTACACCATTGAGATTCACGATGGCAAAACTGCCCACACCcgttcctttgacctctctgGACAAGCATACAATGATGCCTATGCTGAATTCCAAAGACTCAAGGCCGCAGCATTTGCAGAGAAAAACCGTGGCAGAGTACTGGGTGGACTGCCAGACGTTGTCACCATTATGGAGCATAAGACCCTGAGTTTGACATGTACAGTATGGGGTGAGCCCAAGCCCGAGGTCACCTGGTTCAAGAACGAACAGGAAGTTGTGTCTGACGACCACAACCAGATCTCTTTCGAGAGTGGCAAGTTTGCAAGCCTCACCATTAAAACCGTTACGGTGGATGATTCGGGCAAGTACAGCATCAACGTGCGGAACAAGTATGGCGGTGAGTTTGTGGAGATCACCGTCAGTGTGTACAAACAGGGTGAGGAGATCCCTGAACCCAAGTTGGGACAGATGGCAAAACCCACCATAGCACCTAAGTCCCCTGCACCACCCTCCTCAAAGCCCCAGACTCCTGCACCATCCGTGAAGAGCCCAACCCCTACCCCACCCCCGTCTATTAAATCCCCAACCCCAACTCCACCTCAATCCGTAAAGTCCCCTACCCCAGCTCCCAAATCCCCCACCCCACCTAGGAGTGCCAAGTCCCCTACTCCACCCAGATTCATGAGGTCCCCAACGCCCACCAAGAAGTAAGCAAAAGGCTGTTACTGCCAGTGGATGATTTAGATGTTGATACTGCAAAAGGAATAGTGCTTgataatatttgaaaaattgaCCACAGAAGTAGTTCATGAATCACTAACTTATTGGCCAAAATAAAAGAGTATTGACAAAAAGTTAACCTTGTTAGTTTGCCATTTTCATAGAGGTGGCTTATAAATCAGTATAGTCTTTGTTCTATGTGCATGAGACCTTTCAAAAATGGGCTTGTGTAGATTTTATTAGATCAAACTAGAACTCAAGTATCAGACTCAAGGAAGTCAAGGAAGTGTTGAAATGTGTCATTTAATCCAAAAAGATTATGATTATAAAGATACTGAAGTTGAAACCACTGAAAACAGCCACCATCTTTGTGAATGGCATCACCATGAAACTCTCATTCTGTAGCTCTGTAATGCTTTGTTTTGGCAATAAAAACAGTGATCAACTTCCA

Function

NR:

description
myomesin-2-like isoform X2

GO: NA

KEGG:

id description
K24495 MYOM; myomesin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920140.2 True 5271 mRNA 0.49 40 21390844 21415303

Neighbor

gene id symbol gene type direction distance location
ptp4a1 ptp4a1,LOC107597142,LOC107563655 coding downstream 6917 21373441 ~ 21383927 (-)
si:dkey-23f9.4 hyls1 coding downstream 31677 21351305 ~ 21359167 (-)
LOC113531149 NA coding downstream 87077 21294826 ~ 21303767 (-)
LOC117598433 NA coding downstream 123787 21266242 ~ 21267057 (-)
jupa LOC108270763,LOC108438667,LOC105911218 coding downstream 160518 21207329 ~ 21230326 (-)
ly75 LOC108270733 coding upstream 1438 21416741 ~ 21443979 (-)
pla2r1 pla2r1 coding upstream 29073 21444376 ~ 21465934 (-)
itgb6 itgb6 coding upstream 52114 21467417 ~ 21485522 (-)
rbms1a LOC108270806,LOC108438683 coding upstream 81694 21496997 ~ 21516977 (-)
spoplb spoplb,spopl,LOC108270802,LOC108412981,LOC103032629,LOC107551807,LOC107685952,LOC105911847,LOC102233870,LOC107718234 coding upstream 208366 21623669 ~ 21640678 (-)
G185624 NA non-coding downstream 51087 21076329 ~ 21339757 (-)
G185657 NA non-coding downstream 192382 21154745 ~ 21198462 (-)
G185633 NA non-coding downstream 217061 21095021 ~ 21173783 (-)
G185628 NA non-coding downstream 265747 21104329 ~ 21125097 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding downstream 287845 21102019 ~ 21102999 (-)
G185730 NA non-coding upstream 43527 21458830 ~ 21459164 (-)
G185737 NA non-coding upstream 79505 21494808 ~ 21496500 (-)
G185738 NA non-coding upstream 111011 21526314 ~ 21526607 (-)
LOC117598434 NA non-coding upstream 630273 22045576 ~ 22049415 (-)
G185948 NA non-coding upstream 662151 22077454 ~ 22083354 (-)
G185718 NA other downstream 40994 21349009 ~ 21349850 (-)
G185706 LOC108270801 other downstream 65867 21290449 ~ 21324977 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 460889 20923295 ~ 20929955 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 1198701 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1678247 19706082 ~ 19712597 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 383843 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 579845 21995148 ~ 21996155 (-)
ptprc NA other upstream 2237547 23652850 ~ 23684011 (-)
c11h1orf53 NA other upstream 2401224 23816527 ~ 23828091 (-)
lingo3a lingo3,lingo3a,LOC108270778,LOC108438765,LOC107596880,LOC107655199,LOC107719577 other upstream 3069469 24484772 ~ 24503368 (-)

Expression


Co-expression Network