si:dkey-23f9.4 (hyls1)


Basic Information

Item Value
gene id si:dkey-23f9.4
gene name hyls1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21351305 ~ 21359167 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930025.2
TGCTCGGTGCGTCTCCAGGCCTGCAGGCGGCGCTGTTTCCCGGGAAACGCCTCAGGACTTTCTGGGCTGTGGTTAGAAGGAAGGGCGTCATTTTCAAAGCTTCGTGTAACTGCCTTCCGTTGTCTTGACGCTGAGGAAAACATTTTGCTGGACGAAAAGCAAATGGAAAACCTTGACTTCTCAGAGGAAGAAATCCAAGAGCAGTTAGCTGTGCTTGGATACACCAACATAACGAAACAAAGACTGCGTGACTTCAAACGAgATCTCGACTTGCTGATTCATCATGAAAAGTCCAAGAGCAGCACTTCGGCTGAGTGGAGCTCGCCAAAATCTCACAGCAGTTCATGCAAGAGTCCACCAGCGTTCACTAAAGAGAAAGtccaGGTCCCCAGTGCTGCTTCCAAGTACAACTACATTTACTCTGGCAATAGGGCAGCAGATCAGCACAGACAGGTTCTGACCTCAACGTTTAATGATGAAAACTGTGACACTGTGAACCTGGGGCATGGTGACTCTTACATAAAGCACTCAGTGGCTCCCGGATGCATCAGACCCTCTACAGCTCCTAACAGGCTTGAGGTCGAGGACACGTCCTCTGACATTTACCACTCAGTCCTGAGTGCCAGTGAACCTGAGAGGCCCCAGCGAGACCTTCACGCTAATGCAAAACCAGCTCTCAAGAGAAAAGTGCTTAGGAAGCATAGGGGACATTCTCAGGTGTGTGATGAGTCTACGTACAGTGAGGACTCTGagcCAGTAAGTGAGCTGGAAGAGCGCTTGGAGCAACTACGTGTGTCTGCTCCTCACAGGCGACATGAACTGTACTCTGAGAGCGAGGAGACAAGCAGCTACAGTGACAGACACAGCTCTGCAACAGACGAACTGCCCAGTGCTTTTCAGGCCTACATCAAAGGCATGACAAGATCGCGCAGTGAGAACGACATCAGACCTCGTCCCAAATCCTTTATTCGTCCAGTTATGGATCACCCACACACAAGAAACTTGAAAAAAACAGATCCCGTTGCAAAGTATTTCCAGTACAAGCAGGATTGGGAGATGTTTAAGCCCCCTGGAGAGAAGCGCAGGAAAGAGCTACACTTGGCCATCAGGgAGCAACTCGCATACCAGCCTCCACCTCCAAAGCCTCAGAGAACATACGTCCCAAACGCATATGTGGTGCCTACAGAGAAGAAGCGTTCTGCTTTACGATGGGAAATCAGACATGATTTGGCAAATGGAATCATTCCTGCAAAAGTAACCTATACGTAATGTAACTTAAGCAAATGACTAACATCCGTGCCACCTtaatttttaaggtttttatttattaatgcatgtTTTCCCTGTCCTGTGAGTTGTATGATTGAAATGAATGGCATATAGATCAGtgttttatgaaataaattgttttttaata
>XM_034308957.1
TGGGGTTTTAAATATATAGCGACAGGTAGTTAGTTTATTTGGTTTTCACTCTCGCCAGCTCTAAAATAAGGTTAAATGTAGCTGTCTCGGTTAGCTCGGTCAGTGCTGATTTGTTGTCAGGTTCCCAAGATTTCTTCTTTTGCAGAAAGGGACactttaatcataaaaaaaacaaaaaaaaaacaaaaccttcgAACCACTTCACGTTTTATGAAGAAAgCAAATGGAAAACCTTGACTTCTCAGAGGAAGAAATCCAAGAGCAGTTAGCTGTGCTTGGATACACCAACATAACGAAACAAAGACTGCGTGACTTCAAACGAgATCTCGACTTGCTGATTCATCATGAAAAGTCCAAGAGCAGCACTTCGGCTGAGTGGAGCTCGCCAAAATCTCACAGCAGTTCATGCAAGAGTCCACCAGCGTTCACTAAAGAGAAAGtccaGGTCCCCAGTGCTGCTTCCAAGTACAACTACATTTACTCTGGCAATAGGGCAGCAGATCAGCACAGACAGGTTCTGACCTCAACGTTTAATGATGAAAACTGTGACACTGTGAACCTGGGGCATGGTGACTCTTACATAAAGCACTCAGTGGCTCCCGGATGCATCAGACCCTCTACAGCTCCTAACAGGCTTGAGGTCGAGGACACGTCCTCTGACATTTACCACTCAGTCCTGAGTGCCAGTGAACCTGAGAGGCCCCAGCGAGACCTTCACGCTAATGCAAAACCAGCTCTCAAGAGAAAAGTGCTTAGGAAGCATAGGGGACATTCTCAGGTGTGTGATGAGTCTACGTACAGTGAGGACTCTGagcCAGTAAGTGAGCTGGAAGAGCGCTTGGAGCAACTACGTGTGTCTGCTCCTCACAGGCGACATGAACTGTACTCTGAGAGCGAGGAGACAAGCAGCTACAGTGACAGACACAGCTCTGCAACAGACGAACTGCCCAGTGCTTTTCAGGCCTACATCAAAGGCATGACAAGATCGCGCAGTGAGAACGACATCAGACCTCGTCCCAAATCCTTTATTCGTCCAGTTATGGATCACCCACACACAAGAAACTTGAAAAAAACAGATCCCGTTGCAAAGTATTTCCAGTACAAGCAGGATTGGGAGATGTTTAAGCCCCCTGGAGAGAAGCGCAGGAAAGAGCTACACTTGGCCATCAGGgAGCAACTCGCATACCAGCCTCCACCTCCAAAGCCTCAGAGAACATACGTCCCAAACGCATATGTGGTGCCTACAGAGAAGAAGCGTTCTGCTTTACGATGGGAAATCAGACATGATTTGGCAAATGGAATCATTCCTGCAAAAGTAACCTATACGTAATGTAACTTAAGCAAATGACTAACATCCGTGCCACCTtaatttttaaggtttttatttattaatgcatgtTTTCCCTGTCCTGTGAGTTGTATGATTGAAATGAATGGCATATAGATCAGtgttttatgaaataaattgttttttaata

Function

symbol description
hyls1 Predicted to be involved in cilium assembly. Located in several cellular components, including centrosome; cytosol; and nucleus. Implicated in hydrolethalus syndrome 1.

NR:

description
hydrolethalus syndrome protein 1-like

GO: NA

KEGG:

id description
K16472 HYLS1; hydrolethalus syndrome protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930025.2 False 1417 mRNA 0.47 12 21351305 21359167
XM_034308957.1 True 1478 mRNA 0.45 12 21351305 21358981

Neighbor

gene id symbol gene type direction distance location
LOC113531149 NA coding downstream 47538 21294826 ~ 21303767 (-)
LOC117598433 NA coding downstream 84248 21266242 ~ 21267057 (-)
jupa LOC108270763,LOC108438667,LOC105911218 coding downstream 120979 21207329 ~ 21230326 (-)
si:ch211-156l18.8 gpr179 coding downstream 222492 21115995 ~ 21128813 (-)
ap1s2 ap1s2,LOC108438658,LOC108270839,LOC107562082,LOC105893284,LOC107656112,LOC107732206,LOC107602789 coding downstream 272936 21072201 ~ 21078369 (-)
ptp4a1 ptp4a1,LOC107597142,LOC107563655 coding upstream 14274 21373441 ~ 21383927 (-)
myom2a LOC108270736,LOC108438678,LOC107597144 coding upstream 31677 21390844 ~ 21415303 (-)
ly75 LOC108270733 coding upstream 57574 21416741 ~ 21443979 (-)
pla2r1 pla2r1 coding upstream 85209 21444376 ~ 21465934 (-)
itgb6 itgb6 coding upstream 108250 21467417 ~ 21485522 (-)
G185624 NA non-coding downstream 11548 21076329 ~ 21339757 (-)
G185657 NA non-coding downstream 152843 21154745 ~ 21198462 (-)
G185633 NA non-coding downstream 177522 21095021 ~ 21173783 (-)
G185628 NA non-coding downstream 226208 21104329 ~ 21125097 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding downstream 248306 21102019 ~ 21102999 (-)
G185730 NA non-coding upstream 99663 21458830 ~ 21459164 (-)
G185737 NA non-coding upstream 135641 21494808 ~ 21496500 (-)
G185738 NA non-coding upstream 167147 21526314 ~ 21526607 (-)
LOC117598434 NA non-coding upstream 686409 22045576 ~ 22049415 (-)
G185948 NA non-coding upstream 718287 22077454 ~ 22083354 (-)
G185718 NA other downstream 1455 21349009 ~ 21349850 (-)
G185706 LOC108270801 other downstream 26328 21290449 ~ 21324977 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other downstream 421350 20923295 ~ 20929955 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 1159162 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1638708 19706082 ~ 19712597 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 439979 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 635981 21995148 ~ 21996155 (-)
ptprc NA other upstream 2293683 23652850 ~ 23684011 (-)
c11h1orf53 NA other upstream 2457360 23816527 ~ 23828091 (-)
lingo3a lingo3,lingo3a,LOC108270778,LOC108438765,LOC107596880,LOC107655199,LOC107719577 other upstream 3125605 24484772 ~ 24503368 (-)

Expression


Co-expression Network