wdr18 (wdr18)


Basic Information

Item Value
gene id wdr18
gene name wdr18
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20634216 ~ 20702802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922371.2
AACCCCCTCGTTCCAAAATAATCGCGCTTTGTCCGTCCAAGATGTCGGCGCCCGTGGAGGTTGTAGTAACTGCTGATTCGGCAGGGCAGCTGTGGAACTGCGCTATTTTCGACCCTCATACCGGAACAAATCTCTTATCTTACCGAGGGGGGAATTCATCAGCCCGCTCTTTAACCATCCTCAACGGAGAATACATCCTCGGAGCTCAACTCGGCAAGAACTTCATCAACGTGTGGGAGATACAAAGAAAGGACCAACTGCAGCAGAAAATTGTGTGTCCTGGGATTGTAACCTGCCTAACAGCCTCCCCAGATGGTCTCTATGTGCTGGCGGGCATTGCTGAAGCGATATATCTATGGGAGGTTTCAACAGGAAACCTGCTGGTTATTTTGAATCGCCACTACCAGGACTTGAGCTGCCTGCGtttcactgatgacagcagccattttgtgtcAGGGGGAAAGGACAATCTGGCACTTGTATGGAACCTTGCCAGTGTCGTACAGTTGGACTCATCTCACACGCCAGAGCCTCGGCATGTGTTATCACGTCACTCTCTCCCCATCACAGACATACACTGTGGGCTGATGGGACCTCAGGCAAGAGTGGCCACTGCGTCTTTAGACCAGACTGTTAAGCTGTGGGAAATTTCCTCTGGAGAGATGCTTTTGTCAGTCCTCTTTGACGTCAGTATCATGTCGGTGACCCTTGACCCCTGTGAGTACTTCCTGTTCTGTGGAGGCAGTGATGGAAATATCTTTCAGGTGTCCCTCTGTAATACGGCTTTGAGTCGGGATAAGACCTTCCAGTCGGATGGCGAAGGCAATCAGGTGTTCAAAGGCCACAGGAACCTAGTGACGTGCCTGTCTGTTTCCATGGATGGTACGCTGCTGCTCTCAGGTTCGCATGACGAGACTGTCAGGATGTGGGACGTTCAGAGCAAGCAGTGCATCCGCTGCATCAACCACAAAGGTCAGGTGACCAATGCTGCTATTATTCCAGCCCCTGGCAACATGTTCCTGCCCGACAGTCGGCCTGGCATCCCGTTACCTCGCTTCAGCCGTCATCTGAACAATTCGGAGCATGCTGAGGGAGCCGGAACGGGAGGAATGTGTCTCAGGCTGGGCACCAACTGCCAGGAGCCAGAGGAGACGTATCTGGAGAAGGCAGACCGCCTTCATTCTCTTAtgtgtgctgttacagacaAGAGCGTATTCGGTGATGGAGAGAACACAAAGGTACGCGTGTCGGAGTTGGAAGAAGAGGTGAGGACCCTGAAGAAAATCAACAAAGATTTGTATGAGTTTTCCACACAGCTCCTTACAAAGCCTAATTAAAAAGACCTTCCTGAAGTGACCTCATTTTAACCAGAGAGGAGCTTGTTTAAATTGTGGCTGTTCATGAATAAAACGTCAGTcaaatgtatgtatgaatttGGTCACACACGGTGATttggtctctttttttttcctatgagGTATTAGAAATTCTCAGAACATGTGAGATGGGTCTGACTTTGTATGATAaacatctttttaaatattcatccTGTCCACATTTTTGTATACTGTTTCTACATTGAGATGCAGAACTGACCGTCATGTACTCAATAAAACATGGAATAGAATCCATTAATAATGCAAA

Function

symbol description
wdr18 Acts upstream of or within Kupffer's vesicle development and determination of left/right symmetry. Predicted to be located in dynein axonemal particle. Predicted to be part of Rix1 complex and nuclear pre-replicative complex. Is expressed in Kupffer's vesicle; forerunner cell group; liver; and pancreas. Orthologous to human WDR18 (WD repeat domain 18).

NR:

description
WD repeat-containing protein 18

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K14829 IPI3; pre-rRNA-processing protein IPI3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922371.2 True 1644 mRNA 0.48 10 20634216 20702802

Neighbor

gene id symbol gene type direction distance location
grin3bb grin3b,LOC107656093,LOC107602803,LOC107723849,LOC107753820 coding downstream 19111 20565039 ~ 20615105 (-)
med16 med16,LOC107723868,LOC107656090,LOC107753817 coding downstream 88465 20535325 ~ 20545751 (-)
plppr3b plppr3,plppr3b,LOC107753813,LOC107593129,LOC107656087 coding downstream 102603 20511778 ~ 20531613 (-)
palm1a palm,palm1a coding downstream 131956 20470780 ~ 20502260 (-)
misp misp coding downstream 165364 20458259 ~ 20468852 (-)
si:ch211-1a19.3 LOC108270827 coding upstream 4595 20707397 ~ 20710901 (-)
arrdc2 arrdc2,LOC107656095,LOC107692233,LOC107753823,LOC107723859 coding upstream 44353 20747155 ~ 20754711 (-)
LOC113547474 NA coding upstream 53862 20756664 ~ 20764740 (-)
homer3b LOC108270816,LOC103030416,LOC108438642 coding upstream 62246 20765048 ~ 20781939 (-)
il12rb1 NA coding upstream 84346 20787148 ~ 20796664 (-)
G185151 NA non-coding downstream 203717 20430275 ~ 20430499 (-)
G185145 NA non-coding downstream 272643 20357176 ~ 20361573 (-)
G185139 NA non-coding downstream 316944 20303541 ~ 20317272 (-)
G185138 NA non-coding downstream 349954 20283695 ~ 20284262 (-)
G184929 NA non-coding downstream 660754 19973260 ~ 19973462 (-)
G185596 LOC108270818 non-coding upstream 244133 20946935 ~ 20967320 (-)
G185624 NA non-coding upstream 373527 21076329 ~ 21339757 (-)
G185633 NA non-coding upstream 392219 21095021 ~ 21173783 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding upstream 399217 21102019 ~ 21102999 (-)
G185628 NA non-coding upstream 401527 21104329 ~ 21125097 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 442073 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 921619 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 936507 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1317842 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 3281847 17342815 ~ 17352369 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 220493 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 587647 21290449 ~ 21324977 (-)
G185718 NA other upstream 646207 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 1096344 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 1292346 21995148 ~ 21996155 (-)

Expression


Co-expression Network