plppr3b (plppr3,plppr3b,LOC107753813,LOC107593129,LOC107656087)


Basic Information

Item Value
gene id plppr3b
gene name plppr3,plppr3b,LOC107753813,LOC107593129,LOC107656087
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20511778 ~ 20531613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939736.2
TGCCCTGTCCGTACGACACTGTAGTGCTTACATGTTTGGGGAAACAGTGATAGACTTTGATGTGGGAGGGGAACTAACTATACTGAGCAactttaagaataaaaaatactaataaataaagtcaTCTCAGTCGGCTGTGGAAGCCGCAGCATTGCACTGCATGGACGTGAGCAGAAAGACGAATACAAACTGCAGTGTAACCCACTGTGGCAGAAACAACCTATTGATTTAAAGACTTGAGGGGGAAATACACCACCTGCACCACCAGCAtcaccaccagcaccagcaccagcatcACCACCGAGGAGCTTGGGGTTTATCTGGGCAGTGTTTGAGAGAATCCATAATGATGCCTGCACGAGAAACCACCAAGAAGAAACCACCCAAGGACAGCTTAACATTATTACCCTGTTTCTATTTCGTAGAGCTGCCCATCGTGGCTTCCTCTATGGTCTCTCTGTACTTCCTGGAGTTAACTGATGTGCTGCAGCCAGCGCAGGTGGGTTTTCGCTGCCATGATCGCTCGCTCAGCATGCCGTATGTGGAGAGCGGAGAGGAACTTATCCCCCTGCTTATGCTGCTGAGTCTCGCCTTTGCGGGCCCTGCTGCTTCTATTATGATTGGAGAGGGTATTGTGTATTGCATGCAGTCCAGACTCAAGATAGGGCCTGGGAATGAGGGAAGCATCAATGCTGGTGGATGTAATTTCAACTCTTTCCTCCGCAGAACTGTGCGTTTTGTTGGTGTTCATGTGTTTGGTCTTTGTGCCACGGCACTGGTCACTGATGTCATCCAAATTGCCACTGGCTACCACACACCCTTCTTTCTGACTGTATGCAAGCCCAATTACACCCTCCCTGGAGTCTCCTGTGACAAAAATCCCTATATCACTAAAGACATCTGCTCTGGCCATGACCAGCATGCCATTCTCTCTGCCAGGAAAACCTTTCCTTCCCAGCATGCAACTCTTTCTTCCTTTGCTGCTGTTTATATTTCAATGTACTTCAACTCCACTATCTCAGACAGCACCAAGCTGCTGAAGCCTGTGCTGGTGTTTGCCTTCGCCATCGCAGCTGCCCTGACAGGTCTCACTCAGATCACACAGTACCGCAGCCATCCCATTGATGTCTATGTGGGCTTTTGCATCGGCGCTGGCATAGCTGTGTATCTGGCATTCTATGCTGTTTCTAACTTCAAACCAGCTCAGGATGCCATTCTTGTTCCTGCCTTACCCCCCCCGAAGGATGCCCTACGAGCTCTTGCCCAGAGAGGCCACGACTCAGTTTACAATAAAGGCCATGCCTCTGAGAGCAACGAAGAAATCACATCACCGTCTTCCTTGGACGGGTTGAACCGCCCTCTCCAGCGGGAGAAGGCATCATTGGGCAGCCTGAAACGGGCCAGTGTAGATGTAGAGCTCCTTGCACCCCGCAGCCCTATGGGTAAGGAGACTATGGTGACATTCAGCAATACTTTACCACGTGCTACAGCTGCAGGCCCTGAGGAGACTACAAGGCGTCTGGTAACGGTGCCTGTGCCTGTGGACCCAATGCGCTCACACCAGCTAGTCTCTGAATGGAAGCAGAAGTCATTGGAGATGCGCAGTGCAAGTCTGCAGAGCGAAGAGGGCAGTAAAGAGGACTCAGACCTAGGTGAGGACACCACTGAGGAAGAGAGCGCACCATCCACATTATACAGTGCCACTGTTCCACATCCTGCCAAGCCAGCCAATGCACCAACTGGAGCAAAAGTAGTGATGCCCCCCAAGCCACCAGTCCCTCCTCCGGTGTCTCCAAAGAATGCGAGCACCCGTGCTAAGTGGCTGTCCATCACAGAGAAGAGTGGGGCCAATATTCCAGGTGCCATTAGGGCAACGAACCAACCTCGCATTATGCAGGTTATTGCCATGTCCAAGCAGCAAGGTCTGCTGTCCAGCACACCCAAATCTTCTGAGGCCTCATCCTCCTCTGCCACCTCCTCTATCACAGGAACTGAGTCACCCCCCTACCGCCCACCATCTGAGCGTGACAGCAGCTCTGGGATCATCACAGTGGATGCCCATGCCATCCACCACCCTGTAGTCCACATGGTCTCCAACCCTGCCAATCCCTGGGAGTGGAGGGGAACCTCCAATGGGAACATGACCGAGTCATATGAACTCAACGACCTGAACCGCGAGGGCTCTAGAGGATATCGTCAGGTTAAAAACAGCTCACCATGCTCTTCAACCAGTGAGGCTGACCTAGATTCCCATAAGCCTCTTCAAACCCCACAGCCCCCTCAACCTCCCCAGCTCCCCAAGCTTGATCAAACCATGGAGGGACGCAGTCTGCGCTGCAAAACCCCTCTGGTGCTAATTGATCGGGAGAACCCTCAAATCCATCAGGAGAACTTCTACAAAAAGCTGCAGAGTGGAAGACGGTTCAAAGAGTGACAATGCACAACATCTAGGAGCACAAATGATGCAGGTTGGACACATATCACTATGCATCACTCAGACTCTCATTCTCATTTTGTGCATCTTTTAGTTTTGATGACCTTGCTCACTAGTGAGGGGAAATACCTGAGTGGTTTAATGAGCAACATATCCAGAAAATGCTGCTTCAGCCAATACAATGAGCACAatatttttggtcatatttCTCTAGACTGGAATTGCACCGAAACCTAATGAAGAACCTCTACacctatatattttatttaccaaATTCACAGATTGCAAATATGAACAAAAGGCTGACTGCAAGGTTGCTATTTTGTATTGTGGCCTTTTGTCTGTTGGTACTTGATTTTAAGCACATTTGTCTGTGCCTATGATGTCAAGTGGATTTCATCTATTTATGTCTTTTAATGTGGTACTATCTTAGAATATATTGACTTGGGGATAATAATCTAAGATAAACATTTTCATGGAGTTTAAATTGATCAACtttctcctgaggaaggagagAGCTTGACTTCTTTTGCTTAAAGAAATGCTGCACTCAGAAGTGCTTGGCTAGTATTAGTTTTACCACTACTGCATTTCGCATTTTAGTGTAGTACAGTTATGGGGAATGTAACTATTTTGACACATGGAGCTTACAGGCTCATACACATGAATCCTGACTGTAATTCCTGCACACCTTATACAtttcataaacatatttcagaGACTGCCATTTCAGGCTATATGAAAAACAAACTTGTGGGTAAAATTACTGTAAGTCAGTAACTGGTAGTTATTGAACAGTAAGTTCCAGGTCAGAATGGACTACATTTCCCTGCAATAGTCTTcttgaaaaaatataattttattgctATTTTCAATAAAGGAATGCATTATTCTGAGCacttaaaaataaagcacaggGAATTGCCTCAAGTGGCAGATGGTTACAGTTATAGATTCtagtaataaaatgtgttaataagtGAGGAGGTTTGTTTAAGGCATTTACTGTCTgcatattttgcttattttttctcTGGTATTGAAAAACCTGTGGCTTGTGCTCGCTTGCCGATGGACTACTGCATGTTATGTTAGTGGTTGTATCAGTTGGAAGTTCAGCCTTGTCACAGTGATGAATTAAAATTGATCAGTGATTGTCTTTGTATTGTGTGGCAAATGAAACACATTGAAAGTACAATGTGAAGACGTgaagatataatataatataattttcataTTGCGATAATATTGCCAAACCTTTCAGCACAGTTGGAAAACTATGATCAGCATgatattgtattaaaattatatgtattcaaaga

Function

symbol description
plppr3b Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human PLPPR3 (phospholipid phosphatase related 3).
plppr3 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
phospholipid phosphatase-related protein type 3-like

GO: NA

KEGG:

id description
K19582 LPPR3_4; lipid phosphate phosphatase-related protein type 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939736.2 True 3756 mRNA 0.46 8 20511778 20531613

Neighbor

gene id symbol gene type direction distance location
palm1a palm,palm1a coding downstream 9518 20470780 ~ 20502260 (-)
misp misp coding downstream 42926 20458259 ~ 20468852 (-)
LOC113527106 LOC108270803 coding downstream 54997 20453855 ~ 20456781 (-)
ptbp1b ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding downstream 65496 20434442 ~ 20446282 (-)
fam174c fam174a,LOC107753890 coding downstream 82850 20421898 ~ 20428928 (-)
med16 med16,LOC107723868,LOC107656090,LOC107753817 coding upstream 3712 20535325 ~ 20545751 (-)
grin3bb grin3b,LOC107656093,LOC107602803,LOC107723849,LOC107753820 coding upstream 33426 20565039 ~ 20615105 (-)
wdr18 wdr18 coding upstream 102603 20634216 ~ 20702802 (-)
si:ch211-1a19.3 LOC108270827 coding upstream 175784 20707397 ~ 20710901 (-)
arrdc2 arrdc2,LOC107656095,LOC107692233,LOC107753823,LOC107723859 coding upstream 215542 20747155 ~ 20754711 (-)
G185151 NA non-coding downstream 81279 20430275 ~ 20430499 (-)
G185145 NA non-coding downstream 150205 20357176 ~ 20361573 (-)
G185139 NA non-coding downstream 194506 20303541 ~ 20317272 (-)
G185138 NA non-coding downstream 227516 20283695 ~ 20284262 (-)
G184929 NA non-coding downstream 538316 19973260 ~ 19973462 (-)
G185304 NA non-coding upstream 127479 20659092 ~ 20659657 (-)
G185596 LOC108270818 non-coding upstream 415322 20946935 ~ 20967320 (-)
G185624 NA non-coding upstream 544716 21076329 ~ 21339757 (-)
G185633 NA non-coding upstream 563408 21095021 ~ 21173783 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding upstream 570406 21102019 ~ 21102999 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 319635 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 799181 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 814069 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1195404 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 3159409 17342815 ~ 17352369 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 391682 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 758836 21290449 ~ 21324977 (-)
G185718 NA other upstream 817396 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 1267533 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 1463535 21995148 ~ 21996155 (-)

Expression


Co-expression Network