grin3bb (grin3b,LOC107656093,LOC107602803,LOC107723849,LOC107753820)


Basic Information

Item Value
gene id grin3bb
gene name grin3b,LOC107656093,LOC107602803,LOC107723849,LOC107753820
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20565039 ~ 20615105 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922509.2
AGCCCTAGCATCCCACACATTCGTGCCGCAACTCCATCCAGCACCTCATATTCCTTTCCTTGAAAATAAAGGCAATAACGGATTTCTTTAagcaaaaaaggaaagagagggacagggaACGCAACACGAGGCAAGCAATGCAATCTTTTGATCATGCCTCATTGCGCGTGAGAGCGAAGCAGGATGAATTTGATCTGCCCCGGGCTCTTGGCGTACTTCTTCTACTTAGGATTGTACCAGGTGATGCTCCAGTGCATGATCGTGCCGGTCCACTCGCACCCGCAGCCGTGCCGCGTGCTCGCCCAGGTCGGTCACACCGTGCGCCTCGGCGTGCTCCTGCCTTCCCGGCGGCCCATGCGGGTGCGAGCCGCGCTGGACCGCGCGCTCAGCGCCATGGCCGAGAGCGGAAGCCACATCCTGCCCTACAACCTGAGTCTGGACGTGGTAGCGCGCGAGCCGGCCGACGGTGACCCCGAGTCGCTGTTCCGGTGCTTGTGCCAGTCCATAGTGGTGCAGGGGGTCTCAGCAGTGCTCGCTTTCCCCCAGAGCCAGGACGAACTCGTGCAGGTGGAATTTATGTCGTCGTTTTTGGAAATCCCCTTCGTGAGCATAATCGAGCACGGAGAGCCGCTCAAAACAGAGAACCGATTTCACCTGCAGATGATGACACGTATCCCTGCATCAGACCTGGTGGGGCTTCTGTTGGCAGTGCTGCAGCGGAGTGGCTGGCATGAGGGCATGGCTGTACTCTGCCAGGGCTGGGAAGAAGCTGGCCTTCTCGACCTCCTGAAGCTGCAGAGTAACACAGATAAGGGCAACTCTCATTGGAAACTCCGCGCTGCCCTTAACCTCTCGGGGAGTTCATTAGACCAAAAAGGCATATCAGATTTCCTGGAGCAGCACTTCAGCCAGGACCAGCATCCTCCAGCCTCGGTGCTGCTTCTTGGGTCCGATCCACAATGCGCCTCTGCTGTACTGCGCAGTGCCCATGACCTGGGGCTTACATTGCCTACTATACACTGGATTATGGGATATCCATTAAGCCCGGATGCCTTGCATTCCATTGGCTTACCACTGGGACTGTTGGCCTATGGCGAGGTTGATCGCAAGCCTCTGGACTTCTACATTCGTGACACTTTACAGCTGGTCAGTCGAGCAGTTGCTGCTGCCACACTCGTGCGGCCAGATCTTGCTCTTATCCAAAACATGGTGAACTGTTTTGATAAACCCAATAAACATGAACTACCTTCATCTGGACAGTACATTGCCAGGTTTCTCTCAAACACATCCTTCATGGGGCTGACTGGTGCAGTCAGTGTGCAACGGAACATGTCACGCGTGCTTACAGCTCAGCGCGTGCACATCTGGAGGCTTCGGCGCGATGCTGTGGGCCAGCCCACCTGGGTGACAGTGGGCAGCTGGGAGGGCACCCAGCTGGATGTTGAGGAGCGAGGTCTGTGGCAGAGCTCAACTCCACGCCAACGCACCGAGGCACAAAAAGGTCGCGAGGGCAGCCGGTGGAGGCCCGGCTTCCCTGTTTCAGGGAGCCGTGTGCGCGTAGTCACCCTAGTTGAGCACCCGTTTGTGTTCACGAGAGAGGTGGACGAGGATGGCAACTGCCCAGCGGGACAGTACTGCCTGGATGCAGGTACCAACAGTTCAGAGATGTTGGATCGTTTTTTTGCCACGCGAGCACAAGGGAATAACACATTTCTTCCAGCGGAATACAGCAAGTGCTGCTATGGTTACTGCATTGACCTGCTAGAAAAGCTAGCCGAGGACCTGAACTTTGAATTTGACCTTTACATTGTGGGAGACGGGAAATATGGAGCGTGGAAAAGCGGCCGTTGGACAGGGCTGGTCGGCGACCTGCTTAATGGCATAGCTGATATGGCCGTCACCAGCTTCAGCATCAACTCAGCACGCAGCAAAGTAATGGACTTCACCAGCCCTTTCTTCTCCACCAGCTTAGGCATCCTAGTGCGAAGCAAGGACACGGCAGCACCCATTGGAGCGTTCATGTGGCCACTGCACTGGTCCATGTGGGTGGGCATCTTTGTAGCACTGCACATGACGGCACTCTTCCTCACCCTCTATGAGTGGAAAAGCCCATTTGGTATGACTCCACATGGGCGTAACCGCATGAAGGTGTTCTCCTACTCCTCAGCCCTTAACCTGTGCTATGCCATTCTGTTTGGCCGCACAGTATCAAGTAAAACACCCAAGTGCTGGACAGGACGATTCCTCATGAACCTTTGGGCCATCTTTTGCTTGTTAGTTTTGTCCAGTTACACAGCCAACCTTGCTGCAGTCATGGTTGGGGAAAAGACCTTTGAAGAGCTTTCGGGCATTCATGATGCCAAACTCCATCACCCTTCCCATGGGTTCCGCTTTGGCACGGTACGTGAAAGCAGTGCTGAGGACTACATGAAGAAAAGCTTTCCTGAAATGCATGAATATATGAGGAGATTCAATGAGCCAACCACCCCAGATGGTGTTGCTACTCTCAAGACAGATCCCCCCAAGCTTGATGCTTTCATCATGGACAAAGCTCTGCTGGACTACGAGGTATCCATCGATGCCGACTGTAAGCTGTTGACTGTCGGCAAACCCTTCGCTATTGAAGGTTATGGAATCGGACTGCCCCAGAACTCGCCTCTCACATCTAACATTTCAGAATTCATCAGCCGCTACAAATCCGACGGCTACATGGACATGCTGCACGACAAGTGGTACAAAGTGGTACCCTGTGGAAAGAGAGTCTTCGCCATGACAGAGACGCTGCAGATGGGTATCCGGCATTTCTCAGGGCtgtttgtgttgctgtgtgtgggCGTGACTGGGGCATTACTCACTCTCGTAGGTGAACACGCCTTCTACCGTTTGGTTCTTCCTCATATCCGTCGTCGGCAGAAATTCAAGTATTGGCTCCATACCAGCCAGAAAATTCACCGAGCGCTGAATATGACTTACGAGGATGTAAAACGACAGAGAGCCAATGCAGAGAAAAGCTGTAATATTCAGAAGTCCCAGCCGGCACAACCTCCACCACCTCCGCCGCCAGGATCCTTCGCCAAGTGGAATAACGAGAGCAGCCGGGCGGCCAAAGAGCTCAAGGACAACAAGAGGGTTCACTTTAACCTGGAGACGCTGAACACACGCCGCCTCCTCGCCCGTGTAGTTGGAGAAGGCAGTCAGGGTACTTCTGGATCTGCATCTGGGTCCGGATCTGGTTCTGAATCTGCACCCAGTGGAAGTCGGGTATCGAGAGTGTGTGAAAATGGCGGGCCAGTGCCTCTACAGCCACTCCCATCCTCTCCACCTCACTCAACAGACCCTCCCAAAGATGGAGAGCTGGAGGAGCTGCAGGAGAAGATCGAGGAGATCCGTGGTCAGCTGAGGGATGCTCTGGCCCGCCGGGCCCAACTTCAGACTGCTCTCGCCAAAGAACGTGCTGCTGCTGTGATTCCACTGACCCAGGAGGGGCCACCCACAGTCACAGCCACAATTTGCCGCTCCCTCGTCAAAGATTTGGAAGGAAAAAGGTGATGCTGTCGCTTTCAGCACAGCTCAGAGGGGACAATGCAATGAACAACTGAAGGCATCCTGTTTCTGATAGCAATCCAAAGGCTTTCAGTGATGCCTAGAATCTGCTGCAGTCCTCATGCTATGGCATCATCAGGCTCTAGGGCACTGTTATGCTTATGAGAACAGCAAGGGGACACGGATTTGCCCATTTTCTAAAGAAATTCAGAACTTCAGCACCCTATCATGAAGACCCAAAAGAGAAATGTAGCCATGCAGCTGAGGCCTAAAGAAATCCAAAGCTCTCTGGATATAAGGCAGGACACATCAGCATGGCTATATCATGTCTCCTCTTGTGTGGAGAGTATGCACAGGATTTCTACATGCTCCTCTCTGCAGATGTGTTTTTGCGGTTCATGGGAGCACTGGCTTGGGATTTGAAACATGACCTAAAATCTGTCAATagttaagaagaaaaaaaaattggtgggttttaaatgttttgttcagtTATGCAGTATTTGATCTGAAATTATAGTATTGTTAATTGGGCCTGAATGTTTTTCACAAATAAAGTCTAATATAAGAACGGCTAATGACAGTTTGTTATTCATGATTTCTTCTGAGGATAAATGTGATAATGA

Function

symbol description
grin3b Predicted to enable several functions, including glycine binding activity; ion channel activity; and neurotransmitter binding activity. Predicted to contribute to NMDA glutamate receptor activity and calcium channel activity. Predicted to be involved in ionotropic glutamate receptor signaling pathway; protein insertion into membrane; and regulation of calcium ion transport. Predicted to be located in neuronal cell body. Predicted to be part of NMDA selective glutamate receptor complex. Predicted to be active in hippocampal mossy fiber to CA3 synapse and plasma membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 3A-like isoform X3

GO: NA

KEGG:

id description
K05214 GRIN3B; glutamate receptor ionotropic, NMDA 3B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922509.2 True 4169 mRNA 0.52 9 20565039 20615105

Neighbor

gene id symbol gene type direction distance location
med16 med16,LOC107723868,LOC107656090,LOC107753817 coding downstream 19288 20535325 ~ 20545751 (-)
plppr3b plppr3,plppr3b,LOC107753813,LOC107593129,LOC107656087 coding downstream 33426 20511778 ~ 20531613 (-)
palm1a palm,palm1a coding downstream 62779 20470780 ~ 20502260 (-)
misp misp coding downstream 96187 20458259 ~ 20468852 (-)
LOC113527106 LOC108270803 coding downstream 108258 20453855 ~ 20456781 (-)
wdr18 wdr18 coding upstream 19111 20634216 ~ 20702802 (-)
si:ch211-1a19.3 LOC108270827 coding upstream 92292 20707397 ~ 20710901 (-)
arrdc2 arrdc2,LOC107656095,LOC107692233,LOC107753823,LOC107723859 coding upstream 132050 20747155 ~ 20754711 (-)
LOC113547474 NA coding upstream 141559 20756664 ~ 20764740 (-)
homer3b LOC108270816,LOC103030416,LOC108438642 coding upstream 149943 20765048 ~ 20781939 (-)
G185151 NA non-coding downstream 134540 20430275 ~ 20430499 (-)
G185145 NA non-coding downstream 203466 20357176 ~ 20361573 (-)
G185139 NA non-coding downstream 247767 20303541 ~ 20317272 (-)
G185138 NA non-coding downstream 280777 20283695 ~ 20284262 (-)
G184929 NA non-coding downstream 591577 19973260 ~ 19973462 (-)
G185304 NA non-coding upstream 43987 20659092 ~ 20659657 (-)
G185596 LOC108270818 non-coding upstream 331830 20946935 ~ 20967320 (-)
G185624 NA non-coding upstream 461224 21076329 ~ 21339757 (-)
G185633 NA non-coding upstream 479916 21095021 ~ 21173783 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding upstream 486914 21102019 ~ 21102999 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 372896 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 852442 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 867330 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1248665 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 3212670 17342815 ~ 17352369 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 308190 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 675344 21290449 ~ 21324977 (-)
G185718 NA other upstream 733904 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 1184041 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 1380043 21995148 ~ 21996155 (-)

Expression


Co-expression Network