rsph3 (rsph3,LOC107580271)


Basic Information

Item Value
gene id rsph3
gene name rsph3,LOC107580271
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20868387 ~ 20879064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920023.2
CATCCTTAGTTACTGTTGCTAGGGCAACTTTCATAAATAGTAACAGACGTTCCTCGCGTCTTGGCACTCGGCGGCTTCTCGGGTTTATCTGCTTCTTTTCACCATCTAATACAGTTTCTTCTTATGTTATTAGAATGACCTCGGTGTTACAGCCTAAAAGAGGGCCTCCGGATGGATCTTACACGTATTCCAGTCGTCCACATGCCGCCCCCAGCCGCCTCAGACACACGGAGCCCGCGGTGATGGAAAATGAAGGGCGACCAGTCTATGGAAACATCATGTATGATCGACGTGTCGTTAGAGGAAATACCTATGCACAACACATCCTGCCAGTCacgGCTCAGCCTGACCCAGTCGAGATCCAGTGGCAGCAAGAGGCAATGCGACGAGCCACAGCAAGAAAGGGGGCAAAAGACAAGTTTCAGACAAGAAGTTCAGGCACACTTGAGGAGAGAAAGCACATAGATGTTCAGACTGAATTATACTTGGAGGAGCTGAGTGATCATATTGAGGATGCCAGTGTGGAATGCCAGACAGATGCATTTCTGGACAAGCCAGCCACACCTCTCTTTATCCCTGCCAAATCTGGCAAAGATGCAGCGACACAGATAGAAGAAGGAGAGCTGTTTCACTTTGATCTGGAGGTGCAGCCAGTGTTGCAGGTGTTGGTAGGAAAGACCATGGAGCAGGCTTTGCTGGAAGTActggaggaggaagagctgGCTGGGTTGAGGGCTCAACAGTGTGCTTTCCAGGAGTTGCGTAATGCTGAATTGGTGGAAGTTCAACGACTGGAGGAGCAGGAGAGCCGACACAGAGAGGAGAAGGACCGGAGGATTAAGCAGCAAAGGTTGATCttgaagaaggaaagagaaacgGCAGAGAAAATCGCTGCTAGAACATTCACTCAACATTATCTTGCTGACCTTCTTCCTTCAGTCTATGCTAATCTGAGAGACCATGGATACTTCTATGACCCAGTGCAGAGAGATATAGAGACTGGATTCCTTCCCTGGCTGATGGCAGAAGTCAACAATACTTTGGAAAAGCATGATGTTGCACGAACAGTGCTTGACATGCTCATCCAAGATGTGACCAACCAGAGACAGGAAGTCTTTCAGTGTGTGAGCTGCAAATGATGGTTTCTTCTGTTGGACTGGAGAACCTTTTgcagacacaaggagaacatatgaaactcaGAGAGCATAGACAAACAGTTTCGAAcctggactctggagctgtggaAGCAATAATTGTTGCTGCaacttttaaaacattaagaaaCCTTTAAGTCTGCTTATCCAAGCATAATATAAGTGTATGATTCT
>XM_034308493.1
ATCCTTAGTTACTGTTGCTAGGGCAACTTTCATAAATAGTAACAGACGTTCCTCGCGTCTTGGCACTCGGCGGCTTCTCGGGTTTATCTGCTTCTTTTCACCATCTAATACAGTTTCTTCTTATGTTATTAGAATGACCTCGGTGTTACAGCCTAAAAGAGGGCCTCCGGATGGATCTTACACGTATTCCAGTCGTCCACATGCCGCCCCCAGCCGCCTCAGACACACGGAGCCCGCGGTGATGGAAAATGAAGGGCGACCAGTCTATGGAAACATCATGTATGATCGACGTGTCGTTAGAGGAAATACCTATGCACAACACATCCTGCCAGTCacgGCTCAGCCTGACCCAGTCGAGATCCAGTGGCAGCAAGAGGCAATGCGACGAGCCACAGCAAGAAAGGGGGCAAAAGACAAGTTTCAGACAAGAAGTTCAGGCACACTTGAGGAGAGAAAGCACATAGATGTTCAGACTGAATTATACTTGGAGGAGCTGAGTGATCATATTGAGGATGCCAGTGTGGAATGCCAGACAGATGCATTTCTGGACAAGCCAGCCACACCTCTCTTTATCCCTGCCAAATCTGGCAAAGATGCAGCGACACAGATAGAAGAAGGAGAGCTGTTTCACTTTGATCTGGAGGTGCAGCCAGTGTTGCAGGTGTTGGTAGGAAAGACCATGGAGCAGGCTTTGCTGGAAGTActggaggaggaagagctgGCTGGGTTGAGGGCTCAACAGTGTGCTTTCCAGGAGTTGCGTAATGCTGAATTGGTGGAAGTTCAACGACTGGAGGAGCAGGAGAGCCGACACAGAGAGGAGAAGGACCGGAGGATTAAGCAGCAAAGGTTGATCttgaagaaggaaagagaaacgGCAGAGAAAATCGCTGCTAGAACATTCACTCAACATTATCTTGCTGACCTTCTTCCTTCAGTCTATGCTAATCTGAGAGACCATGGATACTTCTATGACCCAGTGCAGAGAGATATAGAGACTGGATTCCTTCCCTGGCTGATGGCAGAAGTCAACAATACTTTGGAAAAGCATGATGTTGCACGAACAGTGCTTGACATGCTCATCCAAGATGTGACCAACCAGAGACAGGAAGTCTTTCAGTGTGTGAGCTGCAAATGATGGTTTCTTCTGTTGGTAAAGTCCCGTTGTACTTGTAGATtcctaaatatgaaaaatggtGATAAATGGTTAAAGTACGCAGTCCACAAGTCCCGCTATATTAAACATATACCTTACCACTTTT

Function

symbol description
rsph3 Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 32. Orthologous to human RSPH3 (radial spoke head 3).

NR:

description
radial spoke head protein 3 homolog

GO: NA

KEGG:

id description
K23965 RSPH3; radial spoke head protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920023.2 True 1328 mRNA 0.47 9 20868387 20879064
XM_034308493.1 False 1262 mRNA 0.47 8 20870867 20879063

Neighbor

gene id symbol gene type direction distance location
abcb11b abcb11b,abcb11,LOC108270741,LOC108438644,LOC107692229,LOC107602798,LOC105911976 coding downstream 2462 20843323 ~ 20865925 (-)
il12rb1 NA coding downstream 71723 20787148 ~ 20796664 (-)
homer3b LOC108270816,LOC103030416,LOC108438642 coding downstream 86448 20765048 ~ 20781939 (-)
LOC113547474 NA coding downstream 103647 20756664 ~ 20764740 (-)
arrdc2 arrdc2,LOC107656095,LOC107692233,LOC107753823,LOC107723859 coding downstream 113676 20747155 ~ 20754711 (-)
atp5f1b atp5b,LOC107723059,LOC107753829 coding upstream 12779 20891843 ~ 20896484 (-)
mknk1 mknk1 coding upstream 29780 20908844 ~ 20921412 (-)
zfyve9b LOC108270756,LOC108438649 coding upstream 69130 20948194 ~ 20963442 (-)
btf3l4 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 coding upstream 85523 20964587 ~ 20967852 (-)
ptgfr ptgfr coding upstream 89546 20968610 ~ 20970863 (-)
G185304 NA non-coding downstream 208730 20659092 ~ 20659657 (-)
G185151 NA non-coding downstream 437888 20430275 ~ 20430499 (-)
G185145 NA non-coding downstream 506814 20357176 ~ 20361573 (-)
G185139 NA non-coding downstream 551115 20303541 ~ 20317272 (-)
G185138 NA non-coding downstream 584125 20283695 ~ 20284262 (-)
G185596 LOC108270818 non-coding upstream 67871 20946935 ~ 20967320 (-)
G185624 NA non-coding upstream 197265 21076329 ~ 21339757 (-)
G185633 NA non-coding upstream 215957 21095021 ~ 21173783 (-)
G185637 npepps,LOC102793525,LOC101475000 non-coding upstream 222955 21102019 ~ 21102999 (-)
G185628 NA non-coding upstream 225265 21104329 ~ 21125097 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 676244 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 1155790 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 1170678 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1552013 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 3516018 17342815 ~ 17352369 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 44231 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 411385 21290449 ~ 21324977 (-)
G185718 NA other upstream 469945 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 920082 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 1116084 21995148 ~ 21996155 (-)

Expression


Co-expression Network