RNA id: XR_003402754.2


Basic Information

Item Value
RNA id XR_003402754.2
length 2773
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC113526295
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19034294 ~ 19050477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAATGAACAAATGGAAAAACTCCACAAGTTCTGCCCTGAGGATCCTGAATAAAAGGAAGTAAAACCTTTCCTATATAAAGAGAGCATGAGACTTCTCTGTTTTGGCTGAAGATGGACAGACCCACAGTGCTGACAAGCCAAGAGCCAAGCTGCCGGCATCGCTGACAGCCGAGCTGAGCCAGGGGATGAGACTTAGAAAGCAAAAGACACGTAGGTCAAAGGCCTTCAGCAAAGGATCCCAGGATGTGACGATAAGCCACTGGCAAATGATGGCCTTCCCCTCAGCActtgatggattttttttctctctttcatttttcaaaaccaCTTGATTGTTATCATAGAAAGATAAAGCACCATGGCGACAGTGAAGAGATCCTGCATTGATGGAACAGCGAGTGGACATTTTGTTTGATGTGTTTTGGGTTAATTTATTCCATACTGGCCATGTATTGTTTTCCATATGGCCTTTCTACACTTGAATTTACTGATTACGTTTTCAAATAGTAAAGCTCTCCCTTATtccgttttttttcccccttaagaTAAACAAAAGTTAGCATTTCAACAGGACTTCAGGGTATTAGGACACTCACTAGAGCAATGGGCCAAGACAACAGAGTCTCTGTTCTCAGTTTTCCTCctagaaaaaaaggttaaatccaGAATCCTAAACTGTTCCTTGAATTATTCCTCTGGGGGGGTTATCCTGAGAGGGGTTCCAATCAAAACCCCTTAACTAGTCAAAGAACCCTTGGGAATCCTTTTTTAATAGGAAGTTCTAAACAAATTTCcatatattaattaaagttaaaagaCACCACATGCAAGCATATGTTAggtcataaaatatttattattaactttattatgaacttttaattaaatacataataGTGCAAGCACTTGACTTAAAGATATATGCACCGACCACTTTATAAGGAACAGCTGTACCTTCTCACTcatgcagcacaatgcataaaatcctggtCAAAGTCCctgacatcacatttttccccattgagacAATTCATATGTACATTAACTACAGCTTTTGATTTTAAGCGTTGTGCTGCTGTGCACTGATTCTTTGATTGGTTAATTGCATgcatgagcaggtgtacaggtgttcctgttaaagtggccaatgagtgtatagtaatactaatgctaatacCAATACTATTACTAGAAAACTAGAAACAATAGTTTTACAAGGTTTTCACAAAGTTTCCCAGTTTgtaactgggggaaaaaatcggCAACTCTCCAGCCCAAGCTCTAAAAGCTCTCTCACAGCAAGAACGCAGCCCACTATTAAGCTTTAAACCTCTCAGCACTGCATATAGTACATTTACCAGCACACAACGCTGCATTTCACAATGTGAGTCATTGATGGAGGAGTTGTTTTGGTTGGCATTTTCCGCTTGTCTCCTACGTCCTGGAAAAGGTATGGAGTCAATCTGAGCAATTTGAGTGGATAAACAGCCGGCCCATCACTCGTTGGGGAGATTTAAAACAAGAGGTGAAGCCAACGTCATTAAGTGTAGTAATCAGCCATGCTGAATGTGAGCCTGTGGTCTCACTCCACTGTACCCTTAGGGTCCAGTTGTACAGGCTTATTTTCTAGATGGCTCTAAAGCGTGTGAAAAAACACACCTAGTAACAAGGTGAATTGTTATTCATTTGTTGCAGGTCTTTTAGATTAACTCGGAAGACTAAAATAGACAGTATACAGAtgtaattatatgtatatagctgtgtgtgttatactATTTTTAAGAAAACTGGAATGTAAAACATCCTGTGAATTTTTATAATTAGAAAAAGTGATTTCACTGGATTTATACAAATCGCAAAGCATGCATGGTGTCTGGTGTCATCATATTATCTTCTCTTAATATAATACACATTAAACCACGTAAATGGTTTATGTTACTGCCCAACTTTGCCATAGCTTCTTTTAGGCTGGTCTACTTTTTATCATGCATTTCAGCACACTACTTTGGAAAGGGGTTGTATTGACTGATTTTCCTAATGATGCTCCTCCGGGAGACTGAAGCACTGCTAAAAGGTGGACACTTTACAACAGgccccatgtttttttttaggttcaTTAAAATAACTTAGGACCTTCTACAAGCTGAAGAACAAGAGGAAACTGTAATTTGTCAAAGTTTTAGCTCCTCTGTGTCATTAATTTCCATACAGTCCAACGCTCCCTAATGATTTATGTGCTCCTCAAAAGGTACACTAGAGGTTATAAATGATTGCATCCTTTGGGAAGAATGAGTAAAATTGTTTGAATAAGAGCTGATATCATCATCAAGAAGATAAGTACGCGGGGCTTCCGACTTGAGGTTGATAGACAAATGTGGCCTGTTCATTAAAATCTGTAATCAAGAACATGTGCAGGCCAGTACTTCCAAATGCAACGGATATAATGCTGATGGCACACTACAAACACATCTGATGTCTATTAAAACCAGTTTCACTGTATCAGCTACATTATGCACATAGTGCATCAAaatcattataccacagcactgtcgaATTCTTGAAtcttattggtcagaagatattgagcaattttctataagagcggCTGCGATAACAGCGCCAGCGGCAAGGCAAATCTTTTACATATATTatactggtttatattaatgcacttgttctcaTTCACAGGGGCCTGTGAGGTGCATGTTCCCTGGttaataatagatttaaaatCTATTGAAGgactccagtgttagcactttgtaagtaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218078 lncRNA downstream 73440 18959249 ~ 18960854 (-) True G184255
XR_003403144.2 lncRNA downstream 85668 18940102 ~ 18948626 (-) True LOC113530379
TU217596 lncRNA downstream 1135941 17898146 ~ 17898353 (-) True G183826
TU217579 lncRNA downstream 1154885 17879205 ~ 17879409 (-) True G183809
TU217324 lncRNA downstream 1168548 17865507 ~ 17865746 (-) True G183558
TU218279 lncRNA upstream 170348 19220825 ~ 19271310 (-) True G184439
TU218304 lncRNA upstream 254835 19305312 ~ 19310955 (-) False G184463
TU218305 lncRNA upstream 254835 19305312 ~ 19313395 (-) True G184463
TU218306 lncRNA upstream 254835 19305312 ~ 19310955 (-) False G184463
TU218309 lncRNA upstream 265642 19316119 ~ 19316363 (-) True trnav-uac_6
XM_034308840.1 mRNA downstream 125831 18893868 ~ 18908463 (-) True prkacba
XM_026922298.2 mRNA downstream 125833 18893868 ~ 18908461 (-) False prkacba
XM_026922290.2 mRNA downstream 132024 18893868 ~ 18902270 (-) False prkacba
XM_026918132.2 mRNA downstream 145619 18877148 ~ 18888675 (-) True samd13
XM_034308700.1 mRNA downstream 163196 18867648 ~ 18871098 (-) True dnase2b
XM_034308665.1 mRNA upstream 51263 19101740 ~ 19196346 (-) False adgrl2a
XM_034308670.1 mRNA upstream 51263 19101740 ~ 19195587 (-) False adgrl2a
XM_034308669.1 mRNA upstream 51263 19101740 ~ 19195587 (-) False adgrl2a
XM_034308668.1 mRNA upstream 51263 19101740 ~ 19195587 (-) False adgrl2a
XM_034308667.1 mRNA upstream 51263 19101740 ~ 19195587 (-) False adgrl2a
TU216998 other downstream 1692051 17245772 ~ 17342243 (-) False zgc:172076
TU216003 other downstream 2755437 16275866 ~ 16278857 (-) False micos13
TU216001 other downstream 2755485 16274882 ~ 16278809 (-) True micos13
trnav-uac_1 other upstream 259534 19310011 ~ 19310083 (-) True trnav-uac_1
trnav-uac_2 other upstream 261334 19311811 ~ 19311883 (-) True trnav-uac_2
trnai-uau_3 other upstream 261708 19312185 ~ 19312256 (-) True trnai-uau_3
trnav-uac_3 other upstream 261895 19312372 ~ 19312444 (-) True trnav-uac_3
trnav-uac_4 other upstream 263019 19313496 ~ 19313568 (-) True trnav-uac_4

Expression Profile