Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026925672.2 |
| length | 536 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 5 |
| gene id | uba52 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 16039835 ~ 16041738 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02927 | RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU380377 | lncRNA | upstream | 16767 | 16022486 ~ 16023068 (+) | True | G321203 |
| XR_004576905.1 | lncRNA | upstream | 335251 | 15683071 ~ 15704584 (+) | True | LOC117600003 |
| TU380138 | lncRNA | upstream | 357626 | 15625802 ~ 15682209 (+) | False | slc25a42 |
| TU380131 | lncRNA | upstream | 422712 | 15616911 ~ 15617123 (+) | True | G320992 |
| TU380130 | lncRNA | upstream | 423617 | 15615997 ~ 15616218 (+) | True | G320991 |
| TU380389 | lncRNA | downstream | 56 | 16041794 ~ 16043738 (+) | True | G321214 |
| TU380392 | lncRNA | downstream | 4408 | 16046146 ~ 16046482 (+) | True | G321217 |
| TU380395 | lncRNA | downstream | 7356 | 16049094 ~ 16049308 (+) | True | G321220 |
| TU380396 | lncRNA | downstream | 7982 | 16049720 ~ 16050849 (+) | True | G321221 |
| TU380398 | lncRNA | downstream | 10046 | 16051784 ~ 16052266 (+) | True | G321223 |
| XM_034314914.1 | mRNA | upstream | 1655 | 16028370 ~ 16038180 (+) | True | cers4b |
| XM_026925779.2 | mRNA | upstream | 40395 | 15992220 ~ 15999440 (+) | True | rab11bb |
| XM_034314823.1 | mRNA | upstream | 55250 | 15938895 ~ 15984585 (+) | True | pip5k1cb |
| XM_026925364.2 | mRNA | downstream | 58795 | 16100533 ~ 16102442 (+) | True | jund |
| XM_026925606.2 | mRNA | downstream | 70297 | 16112035 ~ 16120033 (+) | False | si:ch211-178n15.1 |
| XM_034314867.1 | mRNA | downstream | 70298 | 16112036 ~ 16117345 (+) | True | si:ch211-178n15.1 |
| XM_026925885.2 | mRNA | downstream | 120716 | 16162454 ~ 16167346 (+) | True | cplx4c |
| XM_026925384.2 | mRNA | downstream | 132832 | 16174570 ~ 16180499 (+) | True | rx2 |
| TU380359 | other | upstream | 103067 | 15929952 ~ 15936768 (+) | False | gpx4b |
| TU380255 | other | upstream | 168840 | 15869016 ~ 15870995 (+) | True | G321088 |
| TU379509 | other | upstream | 1211064 | 14827265 ~ 14828771 (+) | False | ly97.3 |
| XR_004580321.1 | other | upstream | 2144170 | 13837433 ~ 13895665 (+) | False | LOC113533270 |
| XR_004580319.1 | other | downstream | 58795 | 16100533 ~ 16111089 (+) | False | jund |
| XR_003403417.2 | other | downstream | 70298 | 16112036 ~ 16120033 (+) | False | si:ch211-178n15.1 |
| TU380434 | other | downstream | 89597 | 16131335 ~ 16132364 (+) | True | G321257 |
| trnag-gcc_18 | other | downstream | 142334 | 16184072 ~ 16184142 (+) | True | trnag-gcc_18 |
| trnag-gcc_19 | other | downstream | 143759 | 16185497 ~ 16185567 (+) | True | trnag-gcc_19 |
