RNA id: XM_034314823.1


Basic Information

Item Value
RNA id XM_034314823.1
length 4500
RNA type mRNA
GC content 0.46
exon number 18
gene id pip5k1cb
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15938895 ~ 15984585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCACTACAATCCGATGTGAGTTTCTccgcggtgtgtgtgtgtgtgtgtgtgttcttcaaaCGGGAAAACCTCACACAGAGGGGTTTGTACACCAACATGTAGCTTTAGAACAACACCACGGCAATGACTAGTCCTCCGTTCTCACCGTCTGCTTCAGCGTAAATACACGCCGCTTTTCGACCGGATCCGATGGAGGGAGCAGTGAGGCAGGCCGAGGCCGGGGGAAGCTCATCCTCAGCCGGGGCCGCTGTGGCGGAGGAGACGGAGACCGTCATTGGAGTCGGATACGGGATAGAAGacACTGCTGCTAAGAAGGCCTACATAACCGAGatgCCGTCCTCATCCTGCCACCCAGGCTCCGGCCCTGAGAAGAAGATTGGCCACAGGAGGGTGGATGCCTCAGGGGAGACCACGTACAAAAAGACGACCTCCTCGGCCCTGAGAGGCGCGATCCAGCTCGGCATCGGCTACACGGTGGGCAACCTGAGCTCCAAACCCGAGAGAGATGTGCTCATGCAGGACTTCTACGTGGTGGAGAGCATCTTCTTtccaagcGAGGGCAGTAATCTGACTCCAGCGCACCACTTCCCAGACTTCAGGTTTAAAACCTACGCCCCCGTGGCCTTCCGTTACTTCCGAGAACTCTTCGGGATTCGACCCGATGACTACCTGTACTCTTTGTGTAATGAGCCCCTGATCGAGCTCTCAAACCCCGGAGCTAGCGGATCCATCTTCTACGTTACACGTGATGACGAGTTCATCATCAAAACTGTGCAGCATAAAGAGGCGGAGTTTCTGCAGAAACTGCTTCCTGGGTATTATATGAATCTGAACCAGAACCCTCGGACGCTGCTCCCCAAATTCTTTGGCCTGTACTGCATACAATCTGGAGGGAAGAACATCCGGATTGTGGTAATGAACAACGTCCTGCCACGCGTCTTCCGTATGCACCTGAAGTTTGATTTGAAGGGCTCCACATACAAGCGCAGAGCGTCCAAGAAGGAGCGAGAGAAAGCTAAGCCTACCTTTAAAGACCTGGACTTTATGCAAGACGTGCCTGATGGATTACTGCTAGACACGGACACTTACAACGCCCTGGTCAAGACCCTGCAGAGGGATTGCCTGgtgttagAAAGCTTTAAGATCATGGACTACAGCCTGCTCCTGGGCGTCCACAATGTGGACCAGGCTGAGCGTGAGCAGCAGACAGAGGGTTCTCAGAGCAGCAGTGATGAGAAGAAGCCTGCAGCCCAGCGAGCACTTTACTCCACAGCAATGGAGTCCATTCAGGGAGGAGCTACCTGTGGAGACTCCATTGACACAGAGGACACAATGGGGGGAATCCCAGCAGTGAGTGGGAAAGGCGAGAGGCTGCTGCTCTTTATTGGCATTATAGACATTCTGCAGTCTTACAGACTCATTAAGAAGCTGGAGCACACATGGAAAGCACTGGTCCATGATGGAGACACAGTATCAGTGCACAGGCCAAACTTCTATGCTGACCGGTTCTACAAGTTCATGAGTTCTACAGTATTCAAGAAGAGCTCCTCGCTGAAGTCTTCTCCATCGAAGAAGAGCCGCAGTGCACTGACGGTGCCCAAACATAGCGGGCCTGGGGCAGCCTGGTCAGCCAGTCAACTCCCCTCAGAGCGAGACCACCACATCTACGACCTGAGAGGAGCGCGCAGCTTTCCTGTGCTTGAGAACGACGGTCTGCAGCCGTGTACTCCTCCATCATTTGAGGAGGCCACCACAGCCTCGGTTGCCACCACTCTGTCATCCAACACGTCCATATCGATCCCAGAGCGATCCCCCTCTGACACAGCAGAGCACCCCCGCTACAGGAGGCAAACCATGACTCTAAAAGACAACGATGGAAGGATGGTTGATGTCCATGAGGAGGACCAGCAGACTATCACGGTGCAGGTGGAGGTTAAGAGAGAGACGGAAGAcgaggaggagaaagaagacACTGTGATAGAGGAGAAAGCAGAGTTTGAGGTTGAGAAGGAGTCTGTGATCTCCTGTACACCACTTCCTACAGAGAGCAGTGTGCCCGGGGAAGCCGATATCCTCTCCCTGCCAGAAATCAGAGAGACTGAGATTCTGGACGACATCATCCCAGAGACAGTCGACCATCCACAGACAGCAGATCTCCTTCCACCTGCGTCACCACTGGCAACTGTCTCTCTTGAGGATGTCACCCTGGAAACAGGCACCCAGGCAGAAGCATCGGTGGCCCCGGAGTCAGGTTCTCCGGATACGCGGGCTCTGAGCTCCACGCTCGGCAGACAGCAATCCGAGTCCCTCAGCCAGACATCTGTGGACGAGGAGGTTGTGCCAATCACCGATATCTATTTTCAGCCTCCAGAGGACAGGAGCTGGGTTTATTCCCCCCTCCAACACCGCTCCGAGTCTCAGCCCGTATCTGATGGAGAGAACGAGGCAtAAACTGTACGCAGTGTGATAGGTGTTGGTTAAACTCGGAGCTGCTCTGTCCTTTCGTCGTTCATGCCCATGAGCCCTGCAGAAGGGACCCTGCTTTGCCAAGCATCATGGGAAGAAATAGTATGGAACTTTTCAGAactaaaagaagaagagaataTCATCAGCCAGTTGATGCTCGGTCCTTTCCCATGTCTCCTTCTTGTCCTGAATCAGATCACGCAAACGTGAGAACTCTCACATGAAGGATTTCCTGATTCCTGTGATGTGAATATATTACTCTCTGCTCTGAGCATCATTCGCCATTATCCAAATCTGATCGTTTCCTCAGTCACAGTAAGCACTCTTCCATCACGTCTCGGTCATTTTAGTCTTTACACAATCTTTCTATGTGCTggatttgttttcattatttaattacgTCAGTAAGTCTGTAATTTACTGGTGAAAACTGAAACAGCTTACTTCTCCATGACGCTGTGATGTAGGAGTTCCCTGGTTTGGGGACGGACGCTGCTCTTTCACGTCTTCTACAACATATCAGTGGCCGTGGCTCAGACGTCGTAACTGAGACACAGCCACGGCTGTAAGGACCTTTCAGGGTTCGAGATTTCATTTAGAGCATATCAAAAGAGTGCTGGTGCAAAGTACTGTGTCCCAAAAAACATCAGTATTCCCAACATCCACCACTACTGTAGTTCATTTCACTAATGTAGAAGTGAACTTGAAAAAGTGTCacgtttttatgtttgtttttttttcttttatataaattagGATCTGTAGGTGTCATTTTGCTTCCtagctatttttaattttaattttacaatagATTTGGGTTAGATTTGGTCGTGTATATTGAGttgtactgtttttttatgGAAACAACACTTCAATATAGTTTACTGAATCATTCCTAATTTCTGAAATTCTATTTAAATAGATAATCTCAGATATTCATGGTCTTACTGccatgtgactgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatatatatgtgtgtgtgtgtgtgtgtgtatgtgcccaCAAGTGCGTGGTGGAGTCTTAATACTCAATACTGTGgtcaaaaaatattaaaatgtattaaaattccATTCTACAGCTATATAACTCTATATAAAACTGTTTATATTGTTCTTACTTTCTTCAAGCCATGTCCCATTTTGAAAGCTTTATTTCATGCATAAAATATgtacaatttcttatttattaccgtttttaacattatttgatAAAAAATCCACATCagctttatatgtttttatttttatttttttctaaatgatgAAATGTAACTCAATTCCATCTCGATATTGAATTTGGTGTAGCAGTATAATCCACAGCATCacaatacagtatgtgtgattGCCTTATTTGGATAAATTATTTTGATAGCTAACAAGAATGGATAAATTTCCCAACGTGTTCGTAATCAATCAGCGTGCTATTTTTCCAAATATAACGACACAGCTTGTGTTGTAGCTATAATGTACATATGTTACGatcagtatagtgtagtatgttTTAATTGATAGGGCTTTTATTTTTGATTGCATgtagtaaaggaaaaaaaactaggATGGAATATGTTAATAACACGAGGAAAATTTCTTCTCCTGTATTCCAAACTAAGTTTGTCGGAGGCTTTAACTGTTGAGATGTCTGGTGTAAAACTCTACTGTTTGTatgtggtgtgaaaaaaaaaaaaaaaatcctcagtagtcagtgtgtgtatgagtgtgcgagtgtgtggatgtgtattttatttgttgagGAAGGTGTGCTTTATTGGAATTTATGTCCAATAATCTTTTCCTCAACGGCGTTGCATGTATTCAGCACTGAGAAGCTCTGCTGAGATAtttatctgtgtctgtctctaaaGGCGTTTAACTGATGCCCTGTGTGTTTGTACAGATCAGTGGATGATTaatggtgtaaaaaaataaaattatacttaaaaatAA

Function

GO: NA

KEGG:

id description
K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576905.1 lncRNA upstream 234311 15683071 ~ 15704584 (+) True LOC117600003
TU380138 lncRNA upstream 256686 15625802 ~ 15682209 (+) False slc25a42
TU380131 lncRNA upstream 321772 15616911 ~ 15617123 (+) True G320992
TU380130 lncRNA upstream 322677 15615997 ~ 15616218 (+) True G320991
TU380127 lncRNA upstream 325354 15613194 ~ 15613541 (+) True G320988
TU380377 lncRNA downstream 37901 16022486 ~ 16023068 (+) True G321203
TU380389 lncRNA downstream 57209 16041794 ~ 16043738 (+) True G321214
TU380392 lncRNA downstream 61561 16046146 ~ 16046482 (+) True G321217
TU380395 lncRNA downstream 64509 16049094 ~ 16049308 (+) True G321220
TU380396 lncRNA downstream 65135 16049720 ~ 16050849 (+) True G321221
XM_034314563.1 mRNA upstream 2122 15929947 ~ 15936773 (+) True gpx4b
XM_034314748.1 mRNA upstream 15606 15894001 ~ 15923289 (+) True arhgap45a
XM_034314749.1 mRNA upstream 15606 15896757 ~ 15923289 (+) False arhgap45a
XM_026925305.2 mRNA upstream 48439 15863147 ~ 15890456 (+) True sbno2a
XM_034297740.1 mRNA upstream 96506 15798191 ~ 15842389 (+) True LOC113533481
XM_026925779.2 mRNA downstream 7635 15992220 ~ 15999440 (+) True rab11bb
XM_034314914.1 mRNA downstream 43785 16028370 ~ 16038180 (+) True cers4b
XM_026925672.2 mRNA downstream 55250 16039835 ~ 16041738 (+) True uba52
XM_026925364.2 mRNA downstream 115948 16100533 ~ 16102442 (+) True jund
XM_026925606.2 mRNA downstream 127450 16112035 ~ 16120033 (+) False si:ch211-178n15.1
TU380359 other upstream 2127 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 67900 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1110124 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 2043230 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 2043230 13837433 ~ 13895665 (+) False LOC113533270
XR_004580319.1 other downstream 115948 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 127451 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 146750 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 199487 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 200912 16185497 ~ 16185567 (+) True trnag-gcc_19

Expression Profile