RNA id: TCONS_00008817


Basic Information

Item Value
RNA id TCONS_00008817
length 747
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id XLOC_004218
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32457316 ~ 32563722 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaacttgtttcaaGTCACGTGATTGTAATGACGCGCGAAATTCAGATAGAGGAAAGGACATAGAAACTGAATGGAAGACTAGAGCAAAGTCCGCATTGTTGCGATGTAGAGCATATTGTCCGGGAGTAGCTTTTTTTATCATGTCAATTAACCCAGCTACATTCGAGGCTATGCCGCGCCTCTCGTTAACGGTTGTTTACTCTACTACTCCGCCTAAACGCCACAaatggattattgcaaaacaagatggAGACGTCATTGCAGCTTATTGATTGCACGGCAGAGTAAGCTTTCCACCAGAAGATGGACGTTATCTGAGCACCCAGTTCCTGCGATGGTTTTGAAGTCGACTGCTTACAGTACAAGCAGTATCCTCACGTCTCAGAGGCTGCACCAGAGCTCCCTGGGAGTTTAGAGGCAGCGTTTGTTTGAAGAGCAGTAGAGAGGAGCGTCATCCAGGGAGGTTTACAGAGGAGGGGGGCTTGTGGAAGCTGGTCACCCAGGCTGGATGGATGTTCTGTCAGCCTGCTTCTGTGATGTGCCGCCCTATCTGAAAGGCCCTGATGGGGAGATAGAAAGACTATCAACTGGCTGGAGCTTCAAAGTCCAACTAGCTGGTCTGATCCTCAAGACGAGGCCAGATATGTGAAGGAGAGAATAGGATGTATGATGTGACAAATGGAAATGACAAAGAGGAAGAGGAACAAATCACACACTGAAACAGCATGAGGATCTTTAAATAAG

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0031090 organelle membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008816 lncRNA downstream 65928 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008814 lncRNA downstream 299790 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA downstream 300998 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008813 lncRNA downstream 1246008 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008812 lncRNA downstream 1254477 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008821 lncRNA upstream 246269 32809971 ~ 32928671 (-) False XLOC_004222
TCONS_00008822 lncRNA upstream 261934 32825636 ~ 32928671 (-) False XLOC_004222
TCONS_00008823 lncRNA upstream 363577 32927279 ~ 32942837 (-) False XLOC_004222
TCONS_00008824 lncRNA upstream 366817 32930519 ~ 32932627 (-) True XLOC_004223
TCONS_00008825 lncRNA upstream 369069 32932771 ~ 32942872 (-) True XLOC_004222
TCONS_00008072 mRNA downstream 584688 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008070 mRNA downstream 1181236 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA downstream 1181252 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008068 mRNA downstream 1222732 31218956 ~ 31234584 (-) False XLOC_004213
TCONS_00008074 mRNA upstream 12598 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008079 mRNA upstream 1034511 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 1034912 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 1282738 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 1297475 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008067 other downstream 1285062 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 1948525 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 2092492 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 2301481 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 2356059 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008075 other upstream 167463 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 807549 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 1402456 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 1791842 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 1902693 34466395 ~ 34466513 (-) True XLOC_004247

Expression Profile

//