RNA id: TU485310


Basic Information

Item Value
RNA id TU485310
length 497
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G408836
representative False

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6107715 ~ 6225895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCAAGCGGAGGAGACAAGCCGCTGATAGAGCCGCCCCCTGCATCATATAAGCCTCCTGTCTGGGAACATTTTGGGTTTGCAATCAGTTCCAACTGCGATGGTGAAAAACATGTAGagaaaacagtcagtgtttgtaGACTTTGCTCGACGCGAGTGCCGTATGCTCATGGCAATACATCTAATATGACGTCATCTACACCGTCATCACCCGGGGATTGATAGCGCGCGGGGATGAAGCCCGTTTCCGCCCcggagaaaaacattaaaaagCCCAGTACTCAAAAATATAATGGATACTTCAAACCTCCAGAAGTCCGGCGAAACCTTGCTAGAGGTGATGCAAAAAATGCAGAAGTCCAcggggaaaaaacaaagaggGGTTTCAGCGGATGACGCAATGATGGCCTACTCCACTGGATTCCAGCGCGATGCGACACGGATCAACAGGATAAAGGTAAGTTCTTTTGAAAACTACTAAGAAATTTTGTTTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577649.1 lncRNA upstream 13852 6083684 ~ 6093863 (+) True LOC117596591
TU485298 lncRNA upstream 13856 6083686 ~ 6093859 (+) False LOC117596591
TU485293 lncRNA upstream 35046 6071602 ~ 6072669 (+) True G408824
TU485291 lncRNA upstream 35219 6071602 ~ 6072496 (+) False G408824
TU485290 lncRNA upstream 36918 6070586 ~ 6070797 (+) True G408823
XR_004577650.1 lncRNA downstream 16977 6242872 ~ 6243941 (+) True LOC117596592
TU485354 lncRNA downstream 24097 6249992 ~ 6252851 (+) False LOC117596576
TU485358 lncRNA downstream 30616 6256511 ~ 6257153 (+) True G408878
TU485359 lncRNA downstream 32198 6258093 ~ 6295383 (+) True G408879
TU485366 lncRNA downstream 66498 6292393 ~ 6307034 (+) False LOC117596576
XM_026918432.2 mRNA upstream 59193 6034549 ~ 6048522 (+) True ivns1abpa
XM_026917970.2 mRNA upstream 197820 5903579 ~ 5909895 (+) True arpc5b
XM_026918214.2 mRNA upstream 244099 5848012 ~ 5863616 (+) True gabrr1
XM_026918197.2 mRNA upstream 272772 5810314 ~ 5834943 (+) True gabrr2b
XM_034302062.1 mRNA downstream 22166 6248061 ~ 6309253 (+) True LOC117596576
XM_034302068.1 mRNA downstream 137269 6363164 ~ 6368783 (+) True LOC117596580
XM_034301889.1 mRNA downstream 154178 6380073 ~ 6384224 (+) True LOC117596543
XM_034302066.1 mRNA downstream 168961 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA downstream 206991 6432886 ~ 6437763 (+) False LOC117596579
trnag-gcc_30 other upstream 364853 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 371454 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1448020 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 1448020 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 2226093 3876675 ~ 3881622 (+) False LOC117596542
XR_004577658.1 other downstream 46137 6272032 ~ 6276665 (+) True LOC117596600
TU485379 other downstream 257206 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 330468 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 623611 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1651900 7877795 ~ 7878545 (+) True G409600

Expression Profile